PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6cezH_

Fold library id	PDB Header	Molecule	Title
c6cezH_	2.40	PDB header: immune system	Chain: H: PDB Molecule: heavy chain of fab fragment of rabbit anti-hiv1 gp120 v2

Links to external resources
Added to library: Sat Sep 15 08:42:48 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q E L V E S G G G L V Q P G G S L K L S C K A S G I D F N N C G V T W V R Q A P G Q G L E W I A Y I Y T G L G V G H Y A S S V E G R F T V S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S S
S S
T T S
T T T T
G G G T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S D N A Q N A V F L Q M T S L T A S D T A T Y F C A R D G V M S G V E G Y Y F N L W G P G T L V T V S S G Q P K A P S V F P L A P C C G D T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
S
G G G
S S S S G G G G G S
S S
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P S S T V T L G C L V K G Y L P E P V T V T W N S G T L T N G V R T F P S V R Q S S G L Y S L S S V V S V T S S S Q P V T C N V A H P A T N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T T T
T T
T T S
S S
T T T T

. . . . . . . . . 220 . .

Sequence T K V D K T V A P S T C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	E	L	V	E	S	G	G	G	L	V	Q	P	G	G	S	L	K	L	S	C	K	A	S	G	I	D	F	N	N	C	G	V	T	W	V	R	Q	A	P	G	Q	G	L	E	W	I	A	Y	I	Y	T	G	L	G	V	G	H	Y	A	S	S	V	E	G	R	F	T	V	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T										S	S	S			S	S										T	T	S										T	T	T	T						G	G	G	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	D	N	A	Q	N	A	V	F	L	Q	M	T	S	L	T	A	S	D	T	A	T	Y	F	C	A	R	D	G	V	M	S	G	V	E	G	Y	Y	F	N	L	W	G	P	G	T	L	V	T	V	S	S	G	Q	P	K	A	P	S	V	F	P	L	A	P	C	C	G	D	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	T	T								S			G	G	G										S	S	S	S	G	G	G	G	G	S													S	S															T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	S	S	T	V	T	L	G	C	L	V	K	G	Y	L	P	E	P	V	T	V	T	W	N	S	G	T	L	T	N	G	V	R	T	F	P	S	V	R	Q	S	S	G	L	Y	S	L	S	S	V	V	S	V	T	S	S	S	Q	P	V	T	C	N	V	A	H	P	A	T	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S												S	S								T	T	T	T			T	T										T	T	S													S	S										T	T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.
Sequence	T	K	V	D	K	T	V	A	P	S	T	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S