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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6c3oE_

Fold library idPDB HeaderMoleculeTitle
c6c3oE_3.90PDB header: transport proteinChain: E: PDB Molecule: atp-binding cassette sub-family c member 8;


Added to library: Sat Feb 3 14:31:46 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PLAFCGSENHSAAYRVDQGVLNNGCFVDALNVVPHVFLLFITFPILFIGWGFPGHNLRWILTFMLLFVLV
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Known secondary structure (DSSP)


SS

STTTTTTT

SSGGGSTS

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence CEIAEGILSDGVTESHHLHLYMPAGMAFMAAVTSVVYYHNIETSNFPKLLIALLVYWTLAFITKTIKFVK
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Known secondary structure (DSSP) TTSS
SS

GGGTTTTT
SS
T
 .........150.........160.........170.........180.........190.........200.........210
Sequence FLDHAIGFSQLRFCLTGLLVILYGMLLLVEVNVIRVNYQRLCEAFDAQVRKDAIWQALSHAFGRRLVLSS
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Known secondary structure (DSSP) TS


ST



T
 .........220.........230.........240.........250.........260.........270.........280
Sequence TFRILADLLGFAGPLCIFGIVDHLGKANAYVLAVLLFLALLLQRTFLQASYYVAIETGINLRGAIQTKIY
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Known secondary structure (DSSP) SS



 .........290.........300.........310.........320.........330.........340.........350
Sequence NKIMHLSTSNLSMGEMTAGQICNLVAIDTNQLMWFFFLCPNLWAMPVQIIVGVILLYYILGVSALIGAAV
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Known secondary structure (DSSP) B
TTS

TT
SS

TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence IILLAPVQYFVATKLSQAQRSTLEYSNERLKQTNEMLRGIKLLKLYAWENIFRTRVETTRRKEMTSLRAF
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Known secondary structure (DSSP) S
TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence AIYTSISIFMNTAIPIAAVLITFVGHVPSVAFASLSLFHILVTPLFLLSSVVRSTVKALVSVQKLSEFLS
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Known secondary structure (DSSP) TT


TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence SAEIRCCVQIMGGYFTWTPDGIPTLSNITIRIPRGQLTMIVGQVGCGKSSLLLAALGEMQKVSGAVFWSR
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Known secondary structure (DSSP) S
B



S
SSTTS

S

TT
STTSSTTTTT
S



 .........570.........580.........590.........600.........610.........620.........630
Sequence GPVAYASQKPWLLNATVEENIIFESPFNKQRYKMVIEACSLQPDIDILPHGDQTQIGERGINLSGGQRQR
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Known secondary structure (DSSP)






SS



SSBTSS


T
TSTTGGG
BBSSSSB


 .........640.........650.........660.........670.........680.........690.........700
Sequence ISVARALYQHANVVFLDDPFSALDIHLSDHLMQAGILELLRDDKRTVVLVTHKLQYLPHADWIIAMKDGT
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Known secondary structure (DSSP) T

SS
SSS

SSS

S
GGGSTT
STT
 .........710.........720.........730.........740.........750.........760.........770
Sequence IQREGTLKDFQRSECQLFEHWKTLEIPWRACAKYLSSAGILLLSLLVFSQLLKHMVLVAIDYWLAKWTDT
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Known secondary structure (DSSP)
SSTTTTS
GGG

TS
STT

 .........780.........790.........800.........810.........820.........830.........840
Sequence VYAMVFTVLCSLGIVLCLVTSVTVEWTGLKVAKRLHRSLLNRIILAPMRFFETTPLGSILNRFSSDCNTI
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Known secondary structure (DSSP) TTS
S
T
 .........850.........860.........870.........880.........890.........900.........910
Sequence DQHIPSTLECLSRSTLLCVSALAVISYVTPVFLVALLPLAIVCYFIQKYFRVASRDLQQLDDTTQLPLLS
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Known secondary structure (DSSP)
GGG
 .........920.........930.........940.........950.........960.........970.........980
Sequence HFAETVEGLTTIRAFRYEARFQQKLLEYTDSNNIASLFLTAANRWLEVRMEYIGACVVLIAAVTSISNSL
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Known secondary structure (DSSP) TTTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence HRELSAGLVGLGLTYALMVSNYLNWMVRNLADMELQLGAVKRIHGLLKTEAESYEGLLAPSLIPKNWPDQ
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Known secondary structure (DSSP) S


SS







SS
TTTS
TT


S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence GKIQIQNLSVRYDSSLKPVLKHVNALIAPGQKIGICGRTGSGKSSFSLAFFRMVDTFEGHIIIDGIDIAK
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Known secondary structure (DSSP)

B
SSTTS

SB
S



SS


TTSSGGGT
S


TTSTT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence LPLHTLRSRLSIILQDPVLFSGTIRFNLDPERKCSDSTLWEALEIAQLKLVVKALPGGLDAIITEGGENF
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Known secondary structure (DSSP) S
SS
SS



S
SSS
S
TTT
TSSSSS
S
GGGTTS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence SQGQRQLFCLARAFVRKTSIFIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVHTILSADLVIVL
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Known secondary structure (DSSP)
SS

SSTTTT


SSS
S
TTTGGG
SS
 .........1270.........1280.........1290
Sequence KRGAILEFDKPEKLLSRKDSVFASFVRADK
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Known secondary structure (DSSP) TT


B
S
S


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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