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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6bvdB_

Fold library idPDB HeaderMoleculeTitle
c6bvdB_2.09PDB header: toxinChain: B: PDB Molecule: light chain;


Added to library: Sat May 12 08:20:43 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MPVVINSFNYDDPVNDNTIIYIRPPYYETSNTYFKAFQIMDNVWIIPERYRLGIDPSLFNPPVSLKAGSD
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TTS


SSS

TT
TTTT

TT

TT

GGGGS

T
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence GYFDPNYLSTNTEKNKYLQIMIKLFKRINSKPAGQILLEEIKNAIPYLGNSYTQEEQFTTNNRTVSFNVK
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Known secondary structure (DSSP) S
B
TTTT
STTS



S

TTS
TT


STTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LANGNIVQQMANLIIWGPGPDLTTNKTGGIIYSPYQSMEATPYKDGFGSIMTVEFSPEYATAFNDISSPS
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Known secondary structure (DSSP)
TTS

S

SBTT




B

STT

B
GGGTTS




TT

 .........220.........230.........240.........250.........260.........270.........280
Sequence LFIKDPALILMHELIHVLHGLYGTYITEYKITPNVVQSYMKVTKPITSAEFLTFGGRDRNIVPQSIQSQL
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Known secondary structure (DSSP)

TT


S



SS

TTB


S

GGGGGGS
 .........290.........300.........310.........320.........330.........340.........350
Sequence YNKVLSDYKRIASRLNKVNTATALINIDEFKNLYEWKYQFAKDSNGVYSVDLNKFEQLYKKIYSFTEFNL
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Known secondary structure (DSSP) TT

SSS

T

TTS




 .........360.........370.........380.........390.........400.........410.........420
Sequence AYEFKIKTRLGYLAENFGPFYLPNLLDDSIYTEVDGFNIGALSINYQGQNIGSDINSIKKLQGQGVVSRV
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Known secondary structure (DSSP) TT



SSTTB


TTTT
TTT
BTTTBT

GGGGGGGGGGS
T


SS
 .....
Sequence VRLCS
Predicted secondary structure

SS confidence




Known secondary structure (DSSP)



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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