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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6buaA_

Fold library idPDB HeaderMoleculeTitle
c6buaA_7.10PDB header: rna binding proteinChain: A: PDB Molecule: dicer-2, isoform a;


Added to library: Sat Dec 30 08:51:16 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFRALFMCNTVELARQQAMAVRRCTNFKVGF
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Known secondary structure (DSSP)
TS


TTS



SSTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence YVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQTYVALSSLSVVIIDECHHGTGHHPFREFMRLF
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Known secondary structure (DSSP) SSS



SSS


STTTS



TTS
SSTTT

TTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence TIANQTKLPRVVGLTGVLIKGNEITNVATKLKELEITYRGNIITVSDTKEMENVMLYATKPTEVMVSFPH
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Known secondary structure (DSSP) T
SSS

S




STTTT

S


STTS











 .........220.........230.........240.........250.........260.........270.........280
Sequence QEQVLTVTRLISAEIEKFYVSLDLMNIGVQPIRRSKSLQCLRDPSKKSFVKQLFNDFLYQMKEYGIYAAS
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Known secondary structure (DSSP)
SSSTTTS


S
SSS

TTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence IAIISLIVEFDIKRRQAETLSVKLMHRTALTLCEKIRHLLVQKLQDMTYDDDDDNTPKVQRFLMSLKVSF
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Known secondary structure (DSSP) S
SS


STT


 .........360.........370.........380.........390.........400.........410.........420
Sequence ADKDPKDICCLVFVERRYTCKCIYGLLLNYNLMICSSACNHVFILDPVKTFNMYVQSKGRARTTEAKFVL
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Known secondary structure (DSSP) SSS
SS


SS






SS
S

S

S




SSSS


 .........430.........440.........450.........460.........470.........480.........490
Sequence FTADKEREKTIQQIYQYRKAHNDIAEYLKDRVLEKTEPELYEIKGHDALPRVGEICYAYEIFLEPQFESC
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Known secondary structure (DSSP)
S
TS






SS
S
B




 .........500.........510.........520.........530.........540.........550.........560
Sequence EYTEHMYLNLQTPRNYAILLRNKLPRLAEMPLFSNQGKLHVRVANAPLEVIIQNSEQLELLHQFHGMVFR
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Known secondary structure (DSSP) SS





GGGSS
SS











SS


S

SB


TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence DILKIWHPFFVLDRRSKENSYLVVPLILGAGEQKCFDWELMTNFRRLPQSHGSNVQQREQQPAPRPEDFE
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Known secondary structure (DSSP) T

S
TTSS
SS


S






B
STT
B


SS
GGGS





SS





TTTTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence GKIVTQWYANYDKPMLVTKVHRELTPLSYMEKNQQDKTYYEFTMSKYGNRIGDVVHKDKFMIEVRDLTEQ
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Known secondary structure (DSSP) SB

SSS

SS
SS

TTS

SSSSSTT
STTTT


SSTTT








 .........710.........720.........730.........740.........750.........760.........770
Sequence LTFYVHNVILIPELCFNFNFPGDLWLKLIFLPSILNRMYFLLMERLEILGASFLKLSATLYLASKYSDWN
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Known secondary structure (DSSP) S

SS



TTTS


SSBTTTTTTTTTTTTTS



TTTTT
SSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence EGTLTEVKSKLVVIADTLEALLGVIVKNYGLQHAFKMLEYFKICRADIDKPLTQLLNLELGGKKMRANVN
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Known secondary structure (DSSP) TT

TSSS
T


TTTTTTTS




SSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence TTEIDGFLIDRRYLLQALTHPSYPTNRITGSYQELEFIGAAILDFLISAYIFENNTKMNPGALTDLRSAL
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Known secondary structure (DSSP) TTT
GGG

TTS

SSSSS
SS
S
SGGGS
TTTTTSS
SS
 .........920.........930.........940..
Sequence VNNTTLACICVRHRLNAKLSEIISKFVNFQES
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Known secondary structure (DSSP)

TT


TTTTTTT


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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