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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6bm0A_

Fold library idPDB HeaderMoleculeTitle
c6bm0A_3.80PDB header: protein bindingChain: A: PDB Molecule: cleavage and polyadenylation specificity factor subunit 1;


Added to library: Sat Nov 25 08:24:26 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MYAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRREKLELAASFSFFGNVMSMASVQLA
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SS
SSS
SS



SS






T
 .........80.........90.........100.........110.........120.........130.........140
Sequence GAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLVYGT
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Known secondary structure (DSSP) T
SS

TTT
SSS
S


TTTTTT

S





SSSSTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence RLVVLPFSSFLPSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISL
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Known secondary structure (DSSP)






GGGSTT




S
SS
SS

SS

BTTB
SS



B
 .........220.........230.........240.........250.........260.........270.........280
Sequence NITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLRTQ
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Known secondary structure (DSSP)
TTT








B
S


TTT
SSS
SSS

SSTT
SSS

S


 .........290.........300.........310.........320.........330.........340.........350
Sequence EGVRITLDCAQATFISYDKMVISLKGGEIYVLTLITDGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLG
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Known secondary structure (DSSP) SS




SS
TTT
GGG
TTS






S

TTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence SRLGNSLLLKYTEKATYSFEVCDSILNIGPCANAAVGEPAFLSEEFQNSPEPDLEIVVCSGHGKNGALSV
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Known secondary structure (DSSP)
SSS
B





B









S


GGGTT
SS




GGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence LQKSIRPQVVTTFELPGCYDMWTVIAPRRHGFLILSREDSTMILQTGQEIMELDTSGFATQGPTVFAGNI
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Known secondary structure (DSSP)
SS





TT



SS

SSS


SSSS

SS

S
 .........500.........510.........520.........530.........540.........550.........560
Sequence GDNRYIVQVSPLGIRLLEGVNQLHFIPVAPIVQCAVADPYVVIMSAEGHVTMFLLKSDHRLALHKPPLHH
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Known secondary structure (DSSP) TTTT
SSB

SSSS




B




SS
TTS













 .........570.........580.........590.........600.........610.........620.........630
Sequence QSKVITLCLYRDLSGMFTTPTHWCLLVRENGTMEIYQLPDWRLVFLVKNFPVGQRVLVDSPLVKEVLLVA
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Known secondary structure (DSSP) SS

TT






TTS
SSS

S

SS

SB





 .........640.........650.........660.........670.........680.........690.........700
Sequence LGSRQSRPYLLVHVDQELLIYEAFPHDGNLKVRFKKVPHNINFRGRVARFRYFEDIYGYSGVFICGPSPH
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Known secondary structure (DSSP) STTS
SS







S
BB


S








TT
BSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence WLLVTGRGALRLHPMAIDGPVDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCT
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Known secondary structure (DSSP)

TT




TTS


SSS
STTS


TTS
TTSSS


SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence AHYVAYHVESKVYAVATSTNTPCARIPRMTGEEKEFETIERDERYIHPQQEAFSIQLISPVSWEAIPNAR
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Known secondary structure (DSSP) TTTT




SSS



SS







B
SSS
SB
TT

 .........850.........860.........870.........880.........890.........900.........910
Sequence IELQEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVTCRGRILIMDVIEVVPEPGQPLTKNKFK
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Known secondary structure (DSSP)

SS

B
SSSSSSB




TTS






TT
GGGG
 .........920.........930.........940.........950.........960.........970.........980
Sequence VLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRASELTGMAFIDTQLYIHQMISVKNFILAADVMKSI
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Known secondary structure (DSSP)
SS
TTTTB


SSS

B

S
SSS
SSS

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence SLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRAD
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Known secondary structure (DSSP)
TTTTB

S



S


SS

SSS


SS
SSS
TTTB
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence FHVGAHVNTFWRTPCRWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPRAFRM
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Known secondary structure (DSSP)

SS
B




B




S

B

BTTS




SS

GGG

SS
 .........1130.........1140.........1150.........1160.........1170.....
Sequence LHVDNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDIILDDLLETDRVTAHF
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Known secondary structure (DSSP) SS






TTTGGGTTSS
TTTTS
T



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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