PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6b5bA_

Fold library id	PDB Header	Molecule	Title
c6b5bA_	5.20	PDB header: immune system	Chain: A: PDB Molecule: baculoviral iap repeat-containing protein 1e;

Links to external resources
Added to library: Sat Nov 18 08:55:01 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A F Q V A K S Q E E E E H K E R M K M K K G F N S Q M R S E A K R L K T F E T Y D T F R S W T P Q E M A A A G F Y H T G V K L G V Q C F C C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T T T
T T S S
S S S
S T S S
B
S S S S
B B
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S L I L F G N S L R K L P I E R H K K L R E E A R L E S F E D W P F Y A H G T S P R V L S A A G F V F T G K R D T V Q C F S C G G S L G N W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T
T
G G G
S S
S S
S T T T
S S S S
T T T
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E E G D D P W K E H A K W F P K C E F L Q S K K S D S V F A N E E L R M D M F K D W P Q E S P V G V E A L V R A G F F Y T G K K D I V R C F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S
T T
T T
S T S
T T
S
T T T
S S S S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence S C G G C L E K W A E G D D P M E D H I K F F P E C V F L Q T L K S S A E V I P T L Q S Q F Q E A R S L S E Q L R D N Y T K A T F R H M N L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S
S S
T T
T T
T T S
T T T S
T T
S G G G
S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence P E V C S S L G T D H L L S C D V S I I S K H I S Q P V Q E A L T I P E V F S N L N S V M C V E G E T G S G K T T F L K R I A F L W A S G C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S
S
S S S S S
T T S
B
S
S S
T T T T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence C P L L Y R F Q L V F Y L S L S S I T P D Q G L A N I I C A Q L L G A G G C I S E V C L S S S I Q Q L Q H Q V L F L L D D Y S G L A S L P Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T T T
T T S
S
T T T S S
S S S
T T S G G G
S T T
S
S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence A L H T L I T K N Y L S R T C L L I A V H T N R V R D I R L Y L G T S L E I Q E F P F Y N T V S V L R K F F S H D I I C V E K L I I Y F I D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S S
B
T T S
T T
S
T T T T T T T

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence N K D L Q G V Y K T P L F V A A V C T D W I Q N A S A Q D K F Q D V T L F Q S Y M Q Y L S L K Y K A T A E P L Q A T V S S C G Q L A L T G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T G G G T
T T S T S
G G G G T
S T T
S S T T

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence F S S C F E F N S D D L A E A G V D E D E K L T T L L M S K F T A Q R L R P V Y R F L G P L F Q E F L A A V R L T E L L S S D R Q E D Q D L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S
S S S
S
T S
B
S S
S S
B
S
T T T T S S
T T T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence G L Y Y L R Q I D S P L K A I N S F N I F L Y Y V S S H S S S K A A P T V V S H L L Q L V D E K E S L E N M S E N E D Y M K L H P Q T F L W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S S
S S
S
S T T
S S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence F Q F V R G L W L V S P E S S S S F V S E H L L R L A L I F A Y E S N T V A E C S P F I L Q F L R G K T L A L R V L N L Q Y F R D H P E S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T T S T T
S S T T S T T G G

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence L L L R S L K V S I F A Q D E E I I K N Y E N D I S E G Y W K L S P K P C K I P K L E V Q V N N T D A A D Q A L L Q V L M E V F S A S Q S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G
S
S S
S B
T T
B S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence E F R L F N S S G F L E S I C P A L E L S K A S V T K C S M S R L E L S R A E Q E L L L T L P A L Q S L E V S E T N Q L P E Q L F H N L H K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S
S
T
T
S S
S T T T S

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence F L G L K E L C V R L D G K P D V L S V L P G E F P N L H H M E K L S I R T S T E S D L S K L V K F I Q N F P N L H V F H L K C D F L S N C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
B T T
S S
T T S T T T
S
S S
T
S S
S B

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence E S L M A V L A S C K K L R E I E F S G R C F E A M T F V N I L P N F V S L K I L N L K D Q Q F P D K E T S E K F A Q A L G S L R N L E E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
T
B
T T T T T T
S
S S T T T
T T

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence L V P T G D G I H Q V A K L I V R Q C L Q L P C L R V L T F H D I L D D D S V I E I A R A A T S G G F Q K L E N L D I S M N H K I T E E G Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
T
S
T T
S
S

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . . . . . 1170 . . . . . . . . . 1180 . . . . . . . . . 1190

Sequence R N F F Q A L D N L P N L Q E L N I C R N I P G R I Q V Q A T T V K A L G Q C V S R L P S L I R L H M L S W L L D E E D M K V I N D V K E R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
T T
T T
S
S S
S S
T T

. . . . . . . . .

Sequence H P Q S K R L I I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	F	Q	V	A	K	S	Q	E	E	E	E	H	K	E	R	M	K	M	K	K	G	F	N	S	Q	M	R	S	E	A	K	R	L	K	T	F	E	T	Y	D	T	F	R	S	W	T	P	Q	E	M	A	A	A	G	F	Y	H	T	G	V	K	L	G	V	Q	C	F	C	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T						T	T	T	T	T									T	T	S	S				S	S	S		S					T	S	S		B			S	S	S	S		B	B		S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	L	I	L	F	G	N	S	L	R	K	L	P	I	E	R	H	K	K	L	R	E	E	A	R	L	E	S	F	E	D	W	P	F	Y	A	H	G	T	S	P	R	V	L	S	A	A	G	F	V	F	T	G	K	R	D	T	V	Q	C	F	S	C	G	G	S	L	G	N	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				B					T	T										T									G	G	G			S	S			S	S		S					T	T	T					S	S	S	S					T	T	T				B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	E	G	D	D	P	W	K	E	H	A	K	W	F	P	K	C	E	F	L	Q	S	K	K	S	D	S	V	F	A	N	E	E	L	R	M	D	M	F	K	D	W	P	Q	E	S	P	V	G	V	E	A	L	V	R	A	G	F	F	Y	T	G	K	K	D	I	V	R	C	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T								T	T	S		T	T											T	T			S									T	S			T	T			S							T	T	T					S	S	S	S					S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	S	C	G	G	C	L	E	K	W	A	E	G	D	D	P	M	E	D	H	I	K	F	F	P	E	C	V	F	L	Q	T	L	K	S	S	A	E	V	I	P	T	L	Q	S	Q	F	Q	E	A	R	S	L	S	E	Q	L	R	D	N	Y	T	K	A	T	F	R	H	M	N	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S					S				S	S			T	T								T	T						T	T	S		T	T	T	S																						T	T		S	G	G	G			S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	P	E	V	C	S	S	L	G	T	D	H	L	L	S	C	D	V	S	I	I	S	K	H	I	S	Q	P	V	Q	E	A	L	T	I	P	E	V	F	S	N	L	N	S	V	M	C	V	E	G	E	T	G	S	G	K	T	T	F	L	K	R	I	A	F	L	W	A	S	G	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S	S			S			S	S	S	S	S										T	T	S				B										S			S						S		T	T	T														T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	C	P	L	L	Y	R	F	Q	L	V	F	Y	L	S	L	S	S	I	T	P	D	Q	G	L	A	N	I	I	C	A	Q	L	L	G	A	G	G	C	I	S	E	V	C	L	S	S	S	I	Q	Q	L	Q	H	Q	V	L	F	L	L	D	D	Y	S	G	L	A	S	L	P	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	T	T	T	T										T	T	S				S								T	T	T	S	S				S	S	S										T	T	S	G	G	G								S	T	T			S		S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	A	L	H	T	L	I	T	K	N	Y	L	S	R	T	C	L	L	I	A	V	H	T	N	R	V	R	D	I	R	L	Y	L	G	T	S	L	E	I	Q	E	F	P	F	Y	N	T	V	S	V	L	R	K	F	F	S	H	D	I	I	C	V	E	K	L	I	I	Y	F	I	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T	S	S			B							T	T	S						T	T		S									T	T	T									T	T	T	T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	N	K	D	L	Q	G	V	Y	K	T	P	L	F	V	A	A	V	C	T	D	W	I	Q	N	A	S	A	Q	D	K	F	Q	D	V	T	L	F	Q	S	Y	M	Q	Y	L	S	L	K	Y	K	A	T	A	E	P	L	Q	A	T	V	S	S	C	G	Q	L	A	L	T	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	T	T	G	G	G	T				T	T	S	T									S		G	G	G	G	T			S															T	T				S	S	T	T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	F	S	S	C	F	E	F	N	S	D	D	L	A	E	A	G	V	D	E	D	E	K	L	T	T	L	L	M	S	K	F	T	A	Q	R	L	R	P	V	Y	R	F	L	G	P	L	F	Q	E	F	L	A	A	V	R	L	T	E	L	L	S	S	D	R	Q	E	D	Q	D	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S				S			S				S	S	S		S									T	S		B			S	S			S	S				B		S		T	T													T	T	S	S		T	T	T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	G	L	Y	Y	L	R	Q	I	D	S	P	L	K	A	I	N	S	F	N	I	F	L	Y	Y	V	S	S	H	S	S	S	K	A	A	P	T	V	V	S	H	L	L	Q	L	V	D	E	K	E	S	L	E	N	M	S	E	N	E	D	Y	M	K	L	H	P	Q	T	F	L	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T																	T	T	S	S				S	S													S		S	T							T						S	S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	F	Q	F	V	R	G	L	W	L	V	S	P	E	S	S	S	S	F	V	S	E	H	L	L	R	L	A	L	I	F	A	Y	E	S	N	T	V	A	E	C	S	P	F	I	L	Q	F	L	R	G	K	T	L	A	L	R	V	L	N	L	Q	Y	F	R	D	H	P	E	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																			T		T	T	T	S									T	T								S	S					T	T	S	T	T	G	G
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	L	L	L	R	S	L	K	V	S	I	F	A	Q	D	E	E	I	I	K	N	Y	E	N	D	I	S	E	G	Y	W	K	L	S	P	K	P	C	K	I	P	K	L	E	V	Q	V	N	N	T	D	A	A	D	Q	A	L	L	Q	V	L	M	E	V	F	S	A	S	Q	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G			S																														S	S			S	B									T	T																		B	S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	E	F	R	L	F	N	S	S	G	F	L	E	S	I	C	P	A	L	E	L	S	K	A	S	V	T	K	C	S	M	S	R	L	E	L	S	R	A	E	Q	E	L	L	L	T	L	P	A	L	Q	S	L	E	V	S	E	T	N	Q	L	P	E	Q	L	F	H	N	L	H	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S		T	T												S		S									T													T													S	S			S					T	T	T	S
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	F	L	G	L	K	E	L	C	V	R	L	D	G	K	P	D	V	L	S	V	L	P	G	E	F	P	N	L	H	H	M	E	K	L	S	I	R	T	S	T	E	S	D	L	S	K	L	V	K	F	I	Q	N	F	P	N	L	H	V	F	H	L	K	C	D	F	L	S	N	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S							B	T	T				S	S		T	T	S					T	T	T		S										S	S													T		S	S									S	B
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	E	S	L	M	A	V	L	A	S	C	K	K	L	R	E	I	E	F	S	G	R	C	F	E	A	M	T	F	V	N	I	L	P	N	F	V	S	L	K	I	L	N	L	K	D	Q	Q	F	P	D	K	E	T	S	E	K	F	A	Q	A	L	G	S	L	R	N	L	E	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S		S									T		B			T	T	T					T	T	T											S					S	S										T	T	T		T	T
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	L	V	P	T	G	D	G	I	H	Q	V	A	K	L	I	V	R	Q	C	L	Q	L	P	C	L	R	V	L	T	F	H	D	I	L	D	D	D	S	V	I	E	I	A	R	A	A	T	S	G	G	F	Q	K	L	E	N	L	D	I	S	M	N	H	K	I	T	E	E	G	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T												T		S	S								T																		S		T	T										S			S
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Sequence	R	N	F	F	Q	A	L	D	N	L	P	N	L	Q	E	L	N	I	C	R	N	I	P	G	R	I	Q	V	Q	A	T	T	V	K	A	L	G	Q	C	V	S	R	L	P	S	L	I	R	L	H	M	L	S	W	L	L	D	E	E	D	M	K	V	I	N	D	V	K	E	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T	S		T	T										T	T					S																S	S								S	S															T	T
	.	.	.	.	.	.	.	.	.
Sequence	H	P	Q	S	K	R	L	I	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	T	T