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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6ar6A_

Fold library idPDB HeaderMoleculeTitle
c6ar6A_9.00PDB header: toxin/protein bindingChain: A: PDB Molecule: toxin b;


Added to library: Sat Aug 25 08:49:56 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VNRKQLEKMANVRFRTQEDEYVAILDALEEYHNMSENTVVEKYLKLKDINSLTDIYIDTYKKSGRNKALK
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Known secondary structure (DSSP)

TTTB


SS







S
SS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence KFKEYLVTEVLELKNNNLTPVEKNLHFVWIGGQINDTAINYINQWKDVNSDYNVNVFYDSNAFLINTLKK
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Known secondary structure (DSSP)


S



SS




SS

B
STTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence TVVESAINDTLESFRENLNDPRFDYNKFFRKRMEIIYDKQKNFINYYKAQREENPELIIDDIVKTYLSNE
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Known secondary structure (DSSP) TSTT

SSS


 .........220.........230.........240.........250.........260.........270.........280
Sequence YSKEIDELNTYIEESLNKITQNSGNDVRNFEEFKNGESFNLYEQELVERWNLAAASDILRISALKEIGGM
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Known secondary structure (DSSP) SS

TT

BTTT
STTS

S


 .........290.........300.........310.........320.........330.........340.........350
Sequence YLDVDMLPGIQPDLFESIEKPSSVTVDFWEMTKLEAIMKYKEYIPEYTSEHFDMLDEEVQSSFESVLASK
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Known secondary structure (DSSP)
TT



B
TTSTTTS


TTS
SS
S
TT


SS
TS
 .........360.........370.........380.........390.........400.........410.........420
Sequence SDKSEIFSSLGDMEASPLEVKIAFNSKGIINQGLISVKDSYCSNLIVKQIENRYKILNNSLNPAISEDND
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Known secondary structure (DSSP)
SB






TT

TT

SS
TTTTTTTT

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence FNTTTNTFIDSIMAEANADNGRFMMELGKYLRVGFFPDVKTTINLSGPEAYAAAYQDLLMFKEGSMNIHL
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Known secondary structure (DSSP) T

TTTTT
SSSSSSSS


TTTTTST
S

SS


 .........500.........510.........520.........530.........540.........550.........560
Sequence IEADLRNFEISKTNISQSTEQEMASLWSFDDARAKAQFEEYKRNYFEGSLGEDDNLDFSQNIVVDKEYLL
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Known secondary structure (DSSP)
T

SS





SS

T
SS






 .........570.........580.........590.........600.........610.........620.........630
Sequence EKISSLARSSERGYIHYIVQLQGDKISYEAACNLFAKTPYDSVLFQKNIEDSEIAYYYNPGDGEIQEIDK
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Known secondary structure (DSSP) T




SSSS







SSGGGB
BB
TTSSGGGS
SSSSS
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence YKIPSIISDRPKIKLTFIGHGKDEFNTDIFAGFDVDSLSTEIEAAIDLAKEDISPKSIEINLLGCNMFSY
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Known secondary structure (DSSP) S


SGGGG





SSSS


TTS

S

S

SSS



 .........710.........720.........730.........740.........750.........760.........770
Sequence SINVEETYPGKLLLKVKDKISELMPSISQDSIIVSANQYEVRINSEGRRELLDHSGEWINKEESIIKDIS
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Known secondary structure (DSSP) SSSTTTSTTSSS

STT
SS

TTS

TTS


 .........780.........790.........800.........810.........820.........830.........840
Sequence SKEYISFNPKENKITVKSKNLPELSTLLQEIRNNSNSSDIELEEKVMLTECEINVISNIDTQIVEERIEE
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Known secondary structure (DSSP)


TTSSS



TSTT

T



 .........850.........860.........870.........880.........890.........900.........910
Sequence AKNLTSDSINYIKDEFKLIESISDALCDLKQQNELEDSHFISFEDISETDEGFSIRFINKETGESIFVET
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Known secondary structure (DSSP)
S
SS

T

TTB


GGG



SSSBSSS

 .........920.........930.........940.........950.........960.........970.........980
Sequence EKTIFSEYANHITEEISKIKGTIFDTVNGKLVKKVNLDTTHEVNTLNAAFFIQSLIEYNSSKESLSNLSV
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Known secondary structure (DSSP)


S
SSSS
TT





TTT
TT


SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence AMKVQVYAQLFSTGLNTITDAAKVVELVSTALDETIDLLPTLSEGLPIIATIIDGVSLGAAIKELSETSD
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Known secondary structure (DSSP) SS
GGG


S



S



SSS





BTTB
S

S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence PLLRQEIEAKIGIMAVNLTTATTAIITSSLGIASGFSILLVPLAGISAGIPSLVNNELVLRDKATKVVDY
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Known secondary structure (DSSP) T
B



SS



S
SSS
S
TT


S
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence FKHVSLVETEGVFTLLDDKIMMPQDDLVISEIDFNNNSIVLGKCEIWRMEGGSGHTVTDDIDHFFSAPSI
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Known secondary structure (DSSP) SSTTT
TT
B
SSSSS









SS
TT
SS


S
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence TYREPHLSIYDVLEVQKEELDLSKDLMVLPNAPNRVFAWETGWTPGLRSLENDGTKLLDRIRDNYEGEFY
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Known secondary structure (DSSP)

SS

S


SSS



SS

SB
S




S

SSBTTB
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence WRYFAFIADALITTLKPRYEDTNIRINLDSNTRSFIVPIITTEYIREKLSYSFYGSGGTYALSLSQYNMG
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Known secondary structure (DSSP) SSSS




SS







T
SSS

SS

 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence INIELSESDVWIIDVDNVVRDVTIESDKIKKGDLIEGILSTLSIEENKIILNSHEINFSGEVNGSNGFVS
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Known secondary structure (DSSP)

SB


TT
TTTTS




TTTTS

S

BS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence LTFSILEGINAIIEVDLLSKSYKLLISGELKILMLNSNHIQQKIDYIGFNSELQKNIPYSFVDSEGKENG
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Known secondary structure (DSSP) SSTT
TTTT


TT

S
SS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence FINGSTKEGLFVSELPDVVLISKVYMDDSKPSFGYYSNNLKDVKVITKDNVNILTGYYLKDDIKISLSLT
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Known secondary structure (DSSP) TTTS




SSSB
SSSS

TT
B
SS
TT
STTS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence LQDEKTIKLNSVHLDESGVAEILKFMNRKGNTNTSDSLMSFLESMNIKSIFVNFLQSNIKFILDANFIIS
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Known secondary structure (DSSP)

SSS
TTTTS
SSST

STT
S
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence GTTSIGQFEFICDENDNIQPYFIKFNTLETNYTLYVGNRQNMIVEPNYDLDDSGDISSTVINFSQKYLYG
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Known secondary structure (DSSP)

SS


SS


SS
GGGSSB



SSTTS

GGGSSTTTT
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence IDSCVNKVVISPNIYTDEINITPVYETNNTYPEVIVLDANYINEKINVNINDLSIRYVWSNDGNDFILMS
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Known secondary structure (DSSP) TTTT




SS

GGG

SSS






SSS
SS
SSS
SSS
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence TSEENKVSQVKIRFVNVFKDKTLANKLSFNFSDKQDVPVSEIILSFGLIYINDSLYYFKPPVNNLITGFV
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Known secondary structure (DSSP) SSSS
SSS
TSS

SB
TS


SS

SSS


B
TTSS
B

S
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence TVGDDKYYFNPINGGAASIGETIIDDKNYYFNQSGVLQTGVFSTEDGFKYFAPANTLDENLEGEAIDFTG
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Known secondary structure (DSSP) TT
GGGTS

SSSSS

SSS

S
B

TTS
B



TTSSSS

SS





S
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence KLIIDENIYYFDDNYRGAVEWKELDGEMHYFSPETGKAFKGLNQIGDYKYYFNSDGVMQKGFVSINDNKH
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Known secondary structure (DSSP)
TT
TTT

S
SS
B
TTT

B

SSTT
B
TT

B

S
TT
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence YFDDSGVMKVGYTEIDGKHFYFAENGEMQIGVFNTEDGFKYFAHHNEDLGNEEGEEISYSGILNFNNKIY
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Known secondary structure (DSSP)
B
TT

B

SSTTTT
S
B

TTSSB



TTT


TT



S

SS
 .........2040.........2050.........2060.......
Sequence YFDDSFTAVVGWKDLEDGSKYYFDEDTAEAYILEHHH
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Known secondary structure (DSSP)
B
TTSSB

TTT
SSS






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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