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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6agfA_

Fold library idPDB HeaderMoleculeTitle
c6agfA_3.20PDB header: membrane proteinChain: A: PDB Molecule: sodium channel protein type 4 subunit alpha;


Added to library: Sat Oct 13 09:11:31 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VVRRGAIKVLIHALFSMFIMITILTNCVFMTMSDPPPWSKNVEYTFTGIYTFESLIKILARGFCVDDFTF
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Known secondary structure (DSSP)

S
TTSS
SS

TT

SST
 .........80.........90.........100.........110.........120.........130.........140
Sequence LRDPWNWLDFSVIMMAYLTEFVDLGNISALRTFRVLRALKTITVIPGLKTIVGALIQSVKKLSDVMILTV
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Known secondary structure (DSSP) TTSTT

SS

S

GGGGGGGGGSTTTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence FCLSVFALVGLQLFMGNLRQKCVRWPPPFDWDAYISDEGNFYFLEGSNDALLCGNSSDAGHCPEGYECIK
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Known secondary structure (DSSP) TTGGG






S
TTSS


TT
SS




SSSSS



TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence TGRNPNYGYTSYDTFSWAFLALFRLMTQDYWENLFQLTLRAAGKTYMIFFVVIIFLGSFYLINLILAVVA
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Known secondary structure (DSSP)
S

STTS


SSSTTTTSS
GGGTTTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence MAYAEQNEATLAEDKENCCAPWLKFKNIIHLIVMDPFVDLGITICIVLNTLFMAMEHYPMTEHFDNVLTV
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Known secondary structure (DSSP) T


SSSSTT

SS

 .........360.........370.........380.........390.........400.........410.........420
Sequence GNLVFTGIFTAEMVLKLIAMDPYEYFQQGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKS
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Known secondary structure (DSSP) S
TTTTTTS
S
SS

SGGGSGGGGGGGGGTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence WPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKIALDCNLPRWHMHDFFHSFL
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Known secondary structure (DSSP)
TTTTTTTTTSGGGT
TTSS

SS
SSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence IVFRILCGEWIETMWDCMEVAGQAMCLTVFLMVMVIGNLVVLNLFLALLLSSFSGKKWWTLRRACFKIVE
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Known secondary structure (DSSP) T

ST
TT


S
 .........570.........580.........590.........600.........610.........620.........630
Sequence HNWFETFIVFMILLSSGALAFEDIYIEQRRVIRTILEYADKVFTYIFIMEMLLKWVAYGFKVYFTNAWCW
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Known secondary structure (DSSP) STSTT
SGGGTT
STT
STSSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence LDFLIVDVSIISLVANWLGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLI
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Known secondary structure (DSSP) SSS
SSTTTTTTTGGGGGGGGGGGGT
SSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence FWLIFSIMGVNLFAGKFYYCINTTTSERFDISEVNNKSECESLMHTGQVRWLNVKVNYDNVGLGYLSLLQ
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Known secondary structure (DSSP) TT


TTT
SB

TTT

BGGG
TTS


SS

SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence VATFKGWMDIMYAAVDSREKEEQPQYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGKD
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Known secondary structure (DSSP) TSS

STTB


SSTTGGGTTSSSSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence IFMTEEQKKYYNAMKKLGSKKPQKPIPRPQNKIQGMVYDLVTKQAFDITIMILICLNMVTMMVETDNQSQ
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Known secondary structure (DSSP) TT

TTTTTT


SS






SSSTTTSSTTTT

TT

 .........920.........930.........940.........950.........960.........970.........980
Sequence LKVDILYNINMIFIIIFTGECVLKMLALRQYYFTVGWNIFDFVVVILSIVGLALSDLIQKYFVSPTLFRV
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Known secondary structure (DSSP) TTSTTTTTTSSS

SSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence IRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFAYVKKESGIDDMFNF
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Known secondary structure (DSSP) GGGGGGGGGGGGGS
TTSSS



TT

SSSSS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence ETFGNSIICLFEITTSAGWDGLLNPILNSGPPDCDPNLENPGTSVKGDCGNPSIGICFFCSYIIISFLIV
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Known secondary structure (DSSP) SSGGGT
STTTS

SSSSS
TT


TTSS






 .........1130........
Sequence VNMYIAIILENFNVATEE
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Known secondary structure (DSSP) T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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