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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6aayA_

Fold library idPDB HeaderMoleculeTitle
c6aayA_2.79PDB header: rna binding protein/rnaChain: A: PDB Molecule: bergeyella zoohelcum cas13b (r1177a) mutant;


Added to library: Sat Mar 16 10:14:26 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NIYYNPFKPQDKSYFAGYFNAAXENTDSVFRELGKRLKGKEYTSENFFDAIFKENISLVEYERYVKLLSD
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SS
TT

SS


TTTS
TT

T
 .........80.........90.........100.........110.........120.........130.........140
Sequence YFPXARLLDKKEVPIKERKENFKKNFKGIIKAVRDLRNFYTHKEHGEVEITDEIFGVLDEXLKSTVLTVK
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Known secondary structure (DSSP) T
GGGGTS

TTS

SS

S




TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence KKKVKTDKTKEILKKSIEKQLDILCQKKLEYLRDTARKIEEKRRNQRERGEKELVAPFKYSDKRDDLIAA
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Known secondary structure (DSSP) TTSSSTTT
S










 .........220.........230.........240.........250.........260.........270.........280
Sequence IYNDAFDVYIDKKKDSLKESSKAKYNTKSDPQQEEGDLKIPISKNGVVFLLSLFLTKQEIHAFKSKIAGF
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Known secondary structure (DSSP) TTTTTTT
TTT
SB

TT
SS


SS



SB
TTSBGGGSTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence KATVIDEATVSEATVSHGKNSICFXATHEIFSHLAYKKLKRKVRTAAEQLSVYAKETLXXQXLDELSKVP
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Known secondary structure (DSSP)





SSS

TTT

SSSSTTTT
B

S











TSB
 .........360.........370.........380.........390.........400.........410.........420
Sequence DVVYQNLSEDVQKTFIEDWNEYLKENNTXEEEQVIHPVIRKRYEDKFNYFAIRFLDEFAQFPTLRFQVHL
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Known secondary structure (DSSP) TTS
GGGS



SS
SS


B

S



SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence GNYLHDSRPKENLISDRRIKEKITVFGRLSELEHKKALFIKNTETNEDREHYWEIFPNPNYDFPKENISV
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Known secondary structure (DSSP) TTTS





S
SS
S
S




B



S
 .........500.........510.........520.........530.........540.........550.........560
Sequence NDKDFPIAGSILDREKQPVAGKIGIKVKLLNQQYVSEVDKAVKAHQLKQRKASKPSIQNIIEEIVPINES
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Known secondary structure (DSSP) S
TTS


S
TT

SS

B
S


S
TT

S


TTS

S

BSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence NPKEAIVFGGQPTAYLSXNDIHSILYEFFDKWEKKKEKLEKKGEKELRKEIGKELEKKIVGKIQAQIQQI
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Known secondary structure (DSSP)
TTS

BB
SS
STTSTTTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence IDKDTNAKILKPYQDGNSTAIDKEKLIKDLKQEQNILQKLKDEQTVREKEYNDFIAYQDKNREINKVRDR
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Known secondary structure (DSSP) TT
TTSGGG


SS
S

S

T


 .........710.........720.........730.........740.........750.........760.........770
Sequence NHKQYLKDNLKRKYPEAPARKEVLYYREKGKVAVWLANDIKRFXPTDFKNEWKGEQHSLLQKSLAYYEQC
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Known secondary structure (DSSP)
SS





SS
TTS
T

TGGG
 .........780.........790.........800.........810.........820.........830.........840
Sequence KEELKNLLPEKVFQHLPFKLGGYFQQKYLYQFYTCYLDKRLEYISGLVQQAENFKSENKVFKKVENECFK
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Known secondary structure (DSSP) S
TSSS

SSSS
SSSSSS
TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence FLKKQNYTHKELDARVQSILGYPIFLERGFXDEKPTIIKGKTFKGNEALFADWFRYYKEYQNFQTFYDTE
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Known secondary structure (DSSP) TS
GGGG



TS


TT
S
SS
S

SS

STT
GGGS
T




GGG
TT
 .........920.........930.........940.........950.........960.........970.........980
Sequence NYPLVELEKKQADRKRKTKIYQQKKNDVFTLLXAKHIFKSVFKQDSIDQFSLEDLYQSREERLGNQERAR
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Known secondary structure (DSSP) TS




SSSSTT


TT

GGGS


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence QTGERNTNYIWNKTVDLKLCDGKITVENVKLKNVGDFIKYEYDQRVQAFLKYEENIEWQAFLIEEENYPY
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Known secondary structure (DSSP) SS


TT
GGG
TTTTGGGGGGS

SS

BBS




S

S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence VVEREIEQYEKVRREELLKEVHLIEEYILEKVKDKEILKKGDNQNFKYYILNGLLKQLKNEDVESYKVFN
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Known secondary structure (DSSP) BTT
S

GGGTT
TTTTTSGGG

S

SSS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence LNTEPEDVNINQLKQEATDLEQKAFVLTYIANKFAHNQLPKKEFWDYCQEKYGKIEKEKTYAEYFAEVFK
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Known secondary structure (DSSP) SS

TTT

S
TT



S



TTS
 .........
Sequence KEKEALIKL
Predicted secondary structure

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Known secondary structure (DSSP)



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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