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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6a42A_

Fold library idPDB HeaderMoleculeTitle
c6a42A_1.70PDB header: dna binding proteinChain: A: PDB Molecule: rna-directed dna polymerase homolog (r1),polyubiquitin-c;


Added to library: Sat Oct 27 08:40:44 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MDIRPRLRIGQINLGGAEDATRELPSIARDLGLDIVLVQAQYSMVGFLAQCGAHPKAGVYIRNRVLPCAV
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Known secondary structure (DSSP)

S
SS
TT
TT
SS

TTSSS
SSS
SSSTTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence LHHLSSTHITVVHIGGWDLYMVSAYFQYSDPIDPYLHRLGNILDRLRGARVVICADTNAHSPLWHSLPRH
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Known secondary structure (DSSP)
GGG

SSSSSS

TTS
STTTS




GGGT

 .........150.........160.........170.........180.........190.........200.........210
Sequence YVGRGQEVADRRAKMEDFIGARRLVVHNADGHLPTFSTANGESYVDVTLSTRGVRVSEWRVTNESSSDHR
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Known secondary structure (DSSP) SSS
TT



TT


S
SS



TT


S

SSSB
 .........220.........230.........240.........250.........260.........270.........280
Sequence LIVFGVGGGGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
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Known secondary structure (DSSP)

SS
S
TTS

TT
BS


GGGTT

TTSBTTTT
 .........290...
Sequence NIQKESTLHLVLR
Predicted secondary structure






SS confidence












Known secondary structure (DSSP) T

TT


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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