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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5zdhD_

Fold library idPDB HeaderMoleculeTitle
c5zdhD_3.20PDB header: protein transportChain: D: PDB Molecule: type ii secretion system protein d;


Added to library: Sat Apr 21 08:38:02 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRT
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SS
TTTT
SS
TTTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence EEVIPLDNASASEIARVLESLTQIVADERTNSVIVSGDPATRDKMRRLIRRLDSEMERSGNSQVFYLKYS
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Known secondary structure (DSSP)
SSS



TTTT
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S

S
SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence KAEDLVDVLKQVSGTLTIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRRAQVHVEALIVEVAEGSN
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TTTTT


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 .........220.........230.........240.........250.........260.........270.........280
Sequence INFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVIINPDTNGDLSTLAQLLSGFSGTAVGV
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Known secondary structure (DSSP)
STT




TT


TTS

B







B



TTTTTT

S

 .........290.........300.........310.........320.........330.........340.........350
Sequence VKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQDVPVLTGTVERKKVGIMLKVTPQINEGNAV
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SSSB
 .........360.........370.........380.........390.........400.........410.........420
Sequence QMVIEQEVSKVEGQTSLDVVFGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKS
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SSS


BTT







SGGGG
TTGGGGS
 .........430.........440.........450.........460.........470.........480.........490
Sequence TADKKEKRNLMVFIRPTILRDGMAADGVSQRKYNYMRAEQIYRDEQGLSLMPHTAQPVLPAQNQALPPEV
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Known secondary structure (DSSP)


STTTS

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S







S




 .......
Sequence RAFLNAG
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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