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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5z9xA_

Fold library idPDB HeaderMoleculeTitle
c5z9xA_2.80PDB header: plant protein/rnaChain: A: PDB Molecule: small rna degrading nuclease 1;


Added to library: Sat Jun 30 08:23:53 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ELKLATAEKQVLDELVKLLQSRDLRGENGNWKEFLHVYDKNADSPSDPSRRSHEDLVQFLTTFKKKEDLQ
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Known secondary structure (DSSP)



TT

T


SS
SS


S



SS
SS
TT

S
 .........80.........90.........100.........110.........120.........130.........140
Sequence LLKCHANHLLIENLKQESQDEDTPEQMLVRLTVEHPSYSLDYSFKPYSEDWFVSDVGMKMKKVMESTNMV
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Known secondary structure (DSSP) TS
GGG

STTT


S

SS


GGGS
T


 .........150.........160.........170.........180.........190.........200.........210
Sequence AVDCEMVLCEDGTEGLVRVGVVDRDLKVILDEFVKPNKPVVDYRTDITGITAEDIENASLSVVDIQETLQ
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Known secondary structure (DSSP) BTTS
TTS
B

SS
BS


TTSS

T

B
 .........220.........230.........240.........250.........260.........270.........280
Sequence PFLSTGTILVGHSLNRDLEVLKIDHPKVIDTALVFKLRRPSLNNLCKSILGYGVPHDCVHDASAAMKLAL
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Known secondary structure (DSSP) TT
SST
S



S


S






 ........
Sequence AVVEKRVD
Predicted secondary structure



SS confidence







Known secondary structure (DSSP) S



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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