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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5z6pB_

Fold library idPDB HeaderMoleculeTitle
c5z6pB_2.06PDB header: hydrolaseChain: B: PDB Molecule: b-agarase;


Added to library: Sat Jan 5 08:14:11 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ALPLFDFSQSTLPEEFSFSNVEANLRFECLEIKALSKKHFYTSVFIEPQQNWDWSDLGNFCFAFDARALD
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Known secondary structure (DSSP)




SSSS

TTSTT
TTT
S

SS
B

TTS
SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence EHSTQMFINIFDHQGQMHSRCINIAPGKQQSFMVELKGACNYASGLRSNPCPWTKDVYATWMWGALNIDL
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Known secondary structure (DSSP) SS
TT


BSS






SSSGGG









SS

T
 .........150.........160.........170.........180.........190.........200.........210
Sequence SAISKIELSIHGSLLDHHLLLSNFRLQSSPNYLSGIIDRFGQNAQQEHAQKIHSEQELAEVTKAELTELA
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Known secondary structure (DSSP) TSS
SS




STT
B
TTSSBTT


TT


ST
 .........220.........230.........240.........250.........260.........270.........280
Sequence KGPMLGRSKFGGYLDGPRQQASGYFRTEKIAGKWSLVDPEGYPYFATGLDIIRLANTSTITGIDASEVRR
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Known secondary structure (DSSP) T


SSB
TTS
BTTS





SS
TT
TTS

S
BSSTT


S


 .........290.........300.........310.........320.........330.........340.........350
Sequence AMYQWLPDYNDPLAEHYGYMRQGETYSFYAANLQRKYGADGADYMAKWRDVTVDRMLNWGFTCLGNWTAP
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Known secondary structure (DSSP) TTBS



TTSGGGGG



GGG

T


B
SSB
G
 .........360.........370.........380.........390.........400.........410.........420
Sequence EFYDNQRIPFFANGWIIGEFDQVSSGDDFWAALPDPFDPRFRQRAAATVSQVKNEIKDTPWCVGIFIDNE
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Known secondary structure (DSSP) GGTT
SSS



SS


SSSS
TT

TTSTT
TTS

 .........430.........440.........450.........460.........470.........480.........490
Sequence KSWGRMGSIDGHYGIAIHTLGRSADACPTKAVFVELKGLTHNSAQVEDYALLLEAFASEYFRVVKQELKK
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Known secondary structure (DSSP)



BTTSTTS
SSS
T






 .........500.........510.........520.........530.........540.........550.........560
Sequence QLPNHLYLGCRFADWGMNPEVVRAAAKHVDVVSYNYYKEGLHPEPWSFLADIDMPSIIGEFHFGALDSGF
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Known secondary structure (DSSP)
TTS



BBTTBB

SS

SSS

TTTTTT





B
STTS
 .........570.........580.........590.........600.........610.........620.........630
Sequence FHAGLVTACSQQERGQMFERYMQTVVDNPYFVGAHYFQYIDSPITGRSFDGENYNIGFVSISDVPYQPMV
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Known secondary structure (DSSP) SB

SSB
SST
TTS
SB


TT

TTT


B


SB
TT

B
 .........640......
Sequence DAAKRVNQSMYPKRFR
Predicted secondary structure

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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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