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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5yjsB_

Fold library idPDB HeaderMoleculeTitle
c5yjsB_2.16PDB header: plant proteinChain: B: PDB Molecule: vicilin-like antimicrobial peptides 2-2;


Added to library: Sat Oct 13 08:36:19 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NPYLFESAGFASAFRTGEGHLKILEKFTQRSELFRGIEKYRVAVLEFEPQSFMVPNHCDGEVIYVVAKGA
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Known secondary structure (DSSP)
TT
GGG

SS



GGGGGGTT
TT

SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GIISIAEQKAKYYFVLKKADVKRVPAGATIYFVNRDANQKLVVYVLVKSTNAPGEAQEYFSGGGQNPESF
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Known secondary structure (DSSP)
SS

TT
TT


SS


SSSTT


SS
BTTTB
G
 .........150.........160.........170.........180.........190.........200.........210
Sequence YRAFSSDILEKAFNTAADRLERLFGQQKQGPVIKASEEQIRAISQYASEPTAATGGEIRGPFNLLKGAPL
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Known secondary structure (DSSP) GGGS
TS
TTS

S
S

S




TT




TTSS

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence FESRFGQFFEASPELFAQLRDLDVAVGYMNINQGGMVLPYYNTKSTRLVMVIEGNGRFEMACPHAGDVHY
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Known secondary structure (DSSP) TT
TTT
TTT

TTSS

S







 .........290.........300.........310.........320.........330.........340.........350
Sequence QKVRGNLNVGDLLVVPAAHPITFTATGGSNLRMVGFGINAQNNKKKFLAGKQNIWRNVDREAKELSFNMP
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Known secondary structure (DSSP) TT

TT

TT

SS
TT

SSSSSSGGGGS
TS
 .........360.........370
Sequence GREVEEIFQKQDESYFVAGP
Predicted secondary structure





SS confidence



















Known secondary structure (DSSP) S



S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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