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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5ye2B_

Fold library idPDB HeaderMoleculeTitle
c5ye2B_5.80PDB header: membrane proteinChain: B: PDB Molecule: mammalian endo-lysosomal trpml1 channel;


Added to library: Sat Dec 30 08:32:18 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RKPCKLMLQVVKILVVTVQLILFGLSNQLVVTFREENTIAFRHLFLLGYSDGSDDTFAAYTQEQLYQAIF
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Known secondary structure (DSSP)

TT

TTGGGG
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence YAVDQYLILPEISLGRYAYVRGGGGPWANGSALALCQRYYHRGHVDPANDTFDIDPRVVTDCIQVDPPNL
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Known secondary structure (DSSP)
SS

B





SS
SS

S
SS
TTTT










 .........150.........160.........170.........180.........190.........200.........210
Sequence TLKFHKLINVTIHFQLKTINLQSLINNEIPDCYTFSILITFDNKAHSGRIPIRLETKTHIQECKHPSFRL
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Known secondary structure (DSSP)


TTT
GGGGTTT




SS
SS


S


 .........220.........230.........240.........250.........260.........270.........280
Sequence LFDVVVILTCSLSFLLCARSLLRGFLLQNEFVVFFVNGWYILLVTSDVLTISGTVMKIGIEAKNLASYDV
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Known secondary structure (DSSP)




TTTTGGGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence CSILLGTSTLLVWVGVIRYLTFFHKYNILIATLRVALPSVMRFCCCVAVIYLGYCFCGWIVLGPYHVKFR
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Known secondary structure (DSSP) SSSTTTTTS
SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence SLSMVSECLFSLINGDDMFVTFAAMQAQQGHSSLVWLFSQLYLYSFISLFIYMVLSLFIALITGAYDTIK
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Known secondary structure (DSSP) SSTTTTTS
SS

TTTTTT
 ....
Sequence HPGG
Predicted secondary structure

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Known secondary structure (DSSP) TT


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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