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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5ybbA_

Fold library idPDB HeaderMoleculeTitle
c5ybbA_3.20PDB header: dna binding protein/dnaChain: A: PDB Molecule: type i restriction-modification system methyltransferase


Added to library: Sat Dec 2 08:23:00 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PQTRESLANEIWRACDIMRRDNNCTGIMEYVEHLAWLLFLRFLDAQEEEWEAQAQIPIIDSEYRWRHWAT
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Known secondary structure (DSSP)


SSS

S



S
STTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence KDWPADELLAFVHGRLIPYLRSLGGDPLRETIRSLFSERNVIVCASGYNLKDVIQIVNEINFHSQDDIFT
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Known secondary structure (DSSP) S


TT


TTTT
SS




SSTS
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VSQVYEELLRRLGNENRLAGEFYTPRPVVRFVVELVDPQIGEAVYDPACGTCGFLVEAYLWMKQKERTIE
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Known secondary structure (DSSP)
SSTTTT





TTS

SS

TT
TT

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence DHRILQERTFFGQEKKPVPAFLGLVNMMLHGVTVPRVMRRNTLEENIRNVSERFDVVVTNPPFGGTEGRH
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Known secondary structure (DSSP) TTSB
ST
SS
S
TTTS
TTS



BS





B

TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence IQQNFPIQSNATELLFLQHIMKKLKPRDGARCGMVVPEGTLFRGGAFAEVKRDLLEQFNLHTVVSLPPGT
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Known secondary structure (DSSP) GGGGSSS

SBB
SSTT

TS
TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence FAPYSDVKTALIFFERPGPTKEIWYYELPLPEGLKKFSKGNPIQDEHFEEARKLWRGWDAYRKGLGPVEA
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Known secondary structure (DSSP) STTT



SS






TT
SS

SSS


TTTTSS
GGG
 .........430.........440.........450.........460.........470.........480.......
Sequence CLSERSWIVPVEEVKKRGYDLTARNPNRSGGEELPSPVEIVAGLLEKEREILSIMEELSELLENEKG
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Known secondary structure (DSSP) G
BTTTTS





TTS
S





S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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