PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5y81A_

Fold library id	PDB Header	Molecule	Title
c5y81A_	4.70	PDB header: transcription	Chain: A: PDB Molecule: transcription-associated protein 1;

Links to external resources
Added to library: Sat Apr 21 08:42:53 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T E Q I E Q F A S R F L Q S R Y S T L S E L Y D I M E P E D Y H F F L Q A V I P L L L S P E Q K L R N S M L D I F N R T F Q P Y A M E V L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F L L S V N E E N G I L C M K V L T T L F K S F K K L D S F I R I I I Q I Y K N T P N L I N Q T F L R S S M F S F K I L S E C T M V T L Y S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S Y K Q L T S T S L P E F T P L I M N L N R P A Y C D F I L A Q I K A T S F L A Y V F I R G Y A P D Y V N F V P D L I I R L L Q D C L S S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence R K E L L H A T R H I L S T N Y K K L L D Y L F D E R I L I G N G H E T L R P L A Y S T V A D F I H N I R S E E I E K T I K I Y T G Y L L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T
T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence E S L A L T V Q I M S A K L L L N L V E R I L K L G K P R A K K L L M I I I D S Y M N R F K T L N R Q Y D T I M K Y Y G R Y E T H K K E K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S T
T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence E K L D N D K E S E E F M R K V L E M F D I K N Y A P I L L L P T P T N D P I K D A F Y L Y R T L M S F L K T I I H D L K V F N E E V I V F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
S
S S
T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence K D L F H E C I I G L K F F S A T K D A R E L M D Y L A F M F M Q A T F N E I I E Q E L P F V Y E R M L G L L H V A Q S F L T S E I T F A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S T

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence I L L R F L K G K L K D L N T S N V L I R L F K L S F M S V N L F P N I N E V V L L P H L N D L I L N S L K Y S E P L V Y F Y L I R T L F R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S
T T
T T T T

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence S I G G G R F E N L Y R S I K P I L Q V L L Q S L N Q M L P H E R E L Y V E L C I T V P V R L S V L A P Y L P F L M K P L V F A L Q Q Y P D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
S S
S T
T S
S S
S T T T S
S T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence L V S Q G L R T L E L C I D N L T A E Y F D P I I E P V I D D V S K A L F N N H A I S H N V V R I L G K L G G R N R Q F L K P P T D L T E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S T
S T T
S S
S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence T E L D I D A I A D F K I N G M P E D V P L S V T P G I Q S A L N I L Q S Y K S D I H Y R K S A Y K Y L T C V L L L M T K S S A E F P T N Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S S S S S S
S
T T S
T T
T T T S
S
T T

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence T E L L K T A V N S I K L E R I G I E K N F D L E P T V N K R D Y S N Q E N L F L R L L E S V F Y A T S I K E L K D D A M D L L N N L L D H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T S S
S S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence F C L L Q V N T T L L N K R N Y N S S L I L D A I P F A L S Y Y I P E V R E V G V L A Y K R I Y E K E L A L S H S F I P E L A K Q F I H L C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T T T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence Y D E T Y Y N K R G G V L G I K V L I D N V K S S S V F L K K Y Q Y N L A N G L L F V L K D T Q S E A P S A I T D S A E K L L I D L L S I T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S S T S S
T T T
S S S
S S T T

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence L G N K V L E N T L T D I V C E L S N A N P K V R N A C Q K S L H T I S T G I P I V K L M D H S K Q F L L S P L P F T M Q I G N V D A I T F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T S S
T T S
T T T

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence C L S L P N T F L T F N E E L F R L L Q E S I V L A T E Y S T S E Q L V Q L R I A C I K L L A I A L A Q Q G N I R I R I L A V F F K T S P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S S S
S
S S S
T T T T T T

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . . . . . 1170 . . . . . . . . . 1180 . . . . . . . . . 1190

Sequence I I N T T Y E A L K G S L A E N P K E L L Q N G L K P L L M N T V P G L D A L S K L L E L L I A Y G R K L L D H L T A W C V L D T L F G Q D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T T S T T
T

. . . . . . . . . 1200 . . . . . . . . . 1210 . . . . . . . . . 1220 . . . . . . . . . 1230 . . . . . . . . . 1240 . . . . . . . . . 1250 . . . . . . . . . 1260

Sequence L Q M P T K I I V S I I N I F H L L P D M F L N D L L L K V M L L E R K L R L Q L D S P F R T P L A R Y L N R F H N P V T E Y F K K N M T L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S
T T T S S S
S S
S

. . . . . . . . . 1270 . . . . . . . . . 1280 . . . . . . . . . 1290 . . . . . . . . . 1300 . . . . . . . . . 1310 . . . . . . . . . 1320 . . . . . . . . . 1330

Sequence R Q L V L F M C N I V Q R P E A K E L A E D F E K E L D N F Y D F Y I S N V V S F F T N M V D L F N T M V I T N M I L K L K D M L N L T L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T

. . . . . . . . . 1340 . . . . . . . . . 1350 . . . . . . . . . 1360 . . . . . . . . . 1370 . . . . . . . . . 1380 . . . . . . . . . 1390 . . . . . . . . . 1400

Sequence T I K L Q L N Q S I A K F Q A L Y L R F T E L Q N P L L L D F I D F S S Y S L K K F I F H N K E K Q N N F I N D A T L A R I F V L K N V I N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T

. . . . . . . . . 1410 . . . . . . . . . 1420 . . . . . . . . . 1430 . . . . . . . . . 1440 . . . . . . . . . 1450 . . . . . . . . . 1460 . . . . . . . . . 1470

Sequence S T L I Y E V A K K P K W L E L L H N K I W K N H D L F R F E L L Q L S A I F I I A E I K K D I I K F C W N F I K L E D T L I K Q S A Y L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
S T T

. . . . . . . . . 1480 . . . . . . . . . 1490 . . . . . . . . . 1500 . . . . . . . . . 1510 . . . . . . . . . 1520 . . . . . . . . . 1530 . . . . . . . . . 1540

Sequence T S Y F D F P I K V V T Q V F V A L L R E A R Y L V K Q S L D V L T P V L A G T P D T W I N W V K R V S S Q N N I L Y Q F L I S H P D N S R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G T
T T T T
T

. . . . . . . . . 1550 . . . . . . . . . 1560 . . . . . . . . . 1570 . . . . . . . . . 1580 . . . . . . . . . 1590 . . . . . . . . . 1600 . . . . . . . . . 1610

Sequence D L F I S N I I H H M N K I T F M D S H T L A I D L A S L I L Y W E N K T L L H L R E A C T A F L I R Y V C A S E L G L R A I N I L S E L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . . 1620 . . . . . . . . . 1630 . . . . . . . . . 1640 . . . . . . . . . 1650 . . . . . . . . . 1660 . . . . . . . . . 1670 . . . . . . . . . 1680

Sequence S D L V Y F E K F L E N I L Y Y C M N A L D V L Y V F F K N K T K E W I M E N L P T I Q N L L E K C I V Q E A L Q K V L Q V I M K A I K A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S T T

. . . . . . . . . 1690 . . . . . . . . . 1700 . . . . . . . . . 1710 . . . . . . . . . 1720 . . . . . . . . . 1730 . . . . . . . . . 1740 . . . . . . . . . 1750

Sequence I E E E S P G K T F I Q M L T S V I T S S V T A G V T L A W V L F M N F N I V P L L T P L M K T F S K L C K D H L E E A R I T T K L L E K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . . 1760 . . . . . . . . . 1770 . . . . . . . . . 1780 . . . . . . . . . 1790 . . . . . . . . . 1800 . . . . . . . . . 1810 . . . . . . . . . 1820

Sequence L Y I L L G D S R R P F L S T V A L L I D H S M D Q N F L R K I V N M S R S W I P T V K E K A A I L T K M L A F E I R G E P S L S K L F Y E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T S
T
S T T

. . . . . . . . . 1830 . . . . . . . . . 1840 . . . . . . . . . 1850 . . . . . . . . . 1860 . . . . . . . . . 1870 . . . . . . . . . 1880 . . . . . . . . . 1890

Sequence I V L K L F D N N T E I T V R M E Q P F L G I R K R F M T I L D N S R L Y Y V I R D Q N W E F P W L N Q A L Q L L Y G S F N R N I Y C L S P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S
S
S S

. . . . . . . . . 1900 . . . . . . . . . 1910 . . . . . . . . . 1920 . . . . . . . . . 1930 . . . . . . . . . 1940 . . . . . . . . . 1950 . . . . . . . . . 1960

Sequence P S I L Q E Y L P E N A E M V T E V N D L E L S N F V K G H I A S M Q G L S S D F I D S L I E I F Y Q D P K A I H R A W V T L F P Q V Y K S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S T T T
S S
S T T T
S S
T T S

. . . . . . . . . 1970 . . . . . . . . . 1980 . . . . . . . . . 1990 . . . . . . . . . 2000 . . . . . . .

Sequence I P K N E K Y G F V R S I I T L L S S R T N V I N M L L D S I S K I E S L E L P P H L V K Y L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T
T S S S
S

Download: PDB structure FASTA sequence
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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	E	Q	I	E	Q	F	A	S	R	F	L	Q	S	R	Y	S	T	L	S	E	L	Y	D	I	M	E	P	E	D	Y	H	F	F	L	Q	A	V	I	P	L	L	L	S	P	E	Q	K	L	R	N	S	M	L	D	I	F	N	R	T	F	Q	P	Y	A	M	E	V	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T																																T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	L	L	S	V	N	E	E	N	G	I	L	C	M	K	V	L	T	T	L	F	K	S	F	K	K	L	D	S	F	I	R	I	I	I	Q	I	Y	K	N	T	P	N	L	I	N	Q	T	F	L	R	S	S	M	F	S	F	K	I	L	S	E	C	T	M	V	T	L	Y	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T																								T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	Y	K	Q	L	T	S	T	S	L	P	E	F	T	P	L	I	M	N	L	N	R	P	A	Y	C	D	F	I	L	A	Q	I	K	A	T	S	F	L	A	Y	V	F	I	R	G	Y	A	P	D	Y	V	N	F	V	P	D	L	I	I	R	L	L	Q	D	C	L	S	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S																									T	T														S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	R	K	E	L	L	H	A	T	R	H	I	L	S	T	N	Y	K	K	L	L	D	Y	L	F	D	E	R	I	L	I	G	N	G	H	E	T	L	R	P	L	A	Y	S	T	V	A	D	F	I	H	N	I	R	S	E	E	I	E	K	T	I	K	I	Y	T	G	Y	L	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T			T														T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	E	S	L	A	L	T	V	Q	I	M	S	A	K	L	L	L	N	L	V	E	R	I	L	K	L	G	K	P	R	A	K	K	L	L	M	I	I	I	D	S	Y	M	N	R	F	K	T	L	N	R	Q	Y	D	T	I	M	K	Y	Y	G	R	Y	E	T	H	K	K	E	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T			S	S	S	T																						T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	E	K	L	D	N	D	K	E	S	E	E	F	M	R	K	V	L	E	M	F	D	I	K	N	Y	A	P	I	L	L	L	P	T	P	T	N	D	P	I	K	D	A	F	Y	L	Y	R	T	L	M	S	F	L	K	T	I	I	H	D	L	K	V	F	N	E	E	V	I	V	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T											T	T					S		S	S										T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	K	D	L	F	H	E	C	I	I	G	L	K	F	F	S	A	T	K	D	A	R	E	L	M	D	Y	L	A	F	M	F	M	Q	A	T	F	N	E	I	I	E	Q	E	L	P	F	V	Y	E	R	M	L	G	L	L	H	V	A	Q	S	F	L	T	S	E	I	T	F	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T																											T	T	S									T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	I	L	L	R	F	L	K	G	K	L	K	D	L	N	T	S	N	V	L	I	R	L	F	K	L	S	F	M	S	V	N	L	F	P	N	I	N	E	V	V	L	L	P	H	L	N	D	L	I	L	N	S	L	K	Y	S	E	P	L	V	Y	F	Y	L	I	R	T	L	F	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T																						S		S								T												T								T	T	T	T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	S	I	G	G	G	R	F	E	N	L	Y	R	S	I	K	P	I	L	Q	V	L	L	Q	S	L	N	Q	M	L	P	H	E	R	E	L	Y	V	E	L	C	I	T	V	P	V	R	L	S	V	L	A	P	Y	L	P	F	L	M	K	P	L	V	F	A	L	Q	Q	Y	P	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S	S			S	S				S	T																												T	S				S	S			S	T	T												T	S			S	T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	L	V	S	Q	G	L	R	T	L	E	L	C	I	D	N	L	T	A	E	Y	F	D	P	I	I	E	P	V	I	D	D	V	S	K	A	L	F	N	N	H	A	I	S	H	N	V	V	R	I	L	G	K	L	G	G	R	N	R	Q	F	L	K	P	P	T	D	L	T	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S		S						T																																S	T					T				S	S						S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	T	E	L	D	I	D	A	I	A	D	F	K	I	N	G	M	P	E	D	V	P	L	S	V	T	P	G	I	Q	S	A	L	N	I	L	Q	S	Y	K	S	D	I	H	Y	R	K	S	A	Y	K	Y	L	T	C	V	L	L	L	M	T	K	S	S	A	E	F	P	T	N	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G											S	S	S	S	S	S					S		T	T	S										T	T			T																		T	T	S		S				T	T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	T	E	L	L	K	T	A	V	N	S	I	K	L	E	R	I	G	I	E	K	N	F	D	L	E	P	T	V	N	K	R	D	Y	S	N	Q	E	N	L	F	L	R	L	L	E	S	V	F	Y	A	T	S	I	K	E	L	K	D	D	A	M	D	L	L	N	N	L	L	D	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S																																							T	T	S	S		S	S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	F	C	L	L	Q	V	N	T	T	L	L	N	K	R	N	Y	N	S	S	L	I	L	D	A	I	P	F	A	L	S	Y	Y	I	P	E	V	R	E	V	G	V	L	A	Y	K	R	I	Y	E	K	E	L	A	L	S	H	S	F	I	P	E	L	A	K	Q	F	I	H	L	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													T	T	S	T	T	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	Y	D	E	T	Y	Y	N	K	R	G	G	V	L	G	I	K	V	L	I	D	N	V	K	S	S	S	V	F	L	K	K	Y	Q	Y	N	L	A	N	G	L	L	F	V	L	K	D	T	Q	S	E	A	P	S	A	I	T	D	S	A	E	K	L	L	I	D	L	L	S	I	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S	S	S	S	T																	S	S		T	T	T																			S	S	S		S	S	T	T
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	L	G	N	K	V	L	E	N	T	L	T	D	I	V	C	E	L	S	N	A	N	P	K	V	R	N	A	C	Q	K	S	L	H	T	I	S	T	G	I	P	I	V	K	L	M	D	H	S	K	Q	F	L	L	S	P	L	P	F	T	M	Q	I	G	N	V	D	A	I	T	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	T	T	S	S																																T	T	S				T	T												T
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	C	L	S	L	P	N	T	F	L	T	F	N	E	E	L	F	R	L	L	Q	E	S	I	V	L	A	T	E	Y	S	T	S	E	Q	L	V	Q	L	R	I	A	C	I	K	L	L	A	I	A	L	A	Q	Q	G	N	I	R	I	R	I	L	A	V	F	F	K	T	S	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S	S	S	S		S		S	S	S																T	T																	T	T	T	T
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Sequence	I	I	N	T	T	Y	E	A	L	K	G	S	L	A	E	N	P	K	E	L	L	Q	N	G	L	K	P	L	L	M	N	T	V	P	G	L	D	A	L	S	K	L	L	E	L	L	I	A	Y	G	R	K	L	L	D	H	L	T	A	W	C	V	L	D	T	L	F	G	Q	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T																												T	T	T	S	T	T												T
	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260
Sequence	L	Q	M	P	T	K	I	I	V	S	I	I	N	I	F	H	L	L	P	D	M	F	L	N	D	L	L	L	K	V	M	L	L	E	R	K	L	R	L	Q	L	D	S	P	F	R	T	P	L	A	R	Y	L	N	R	F	H	N	P	V	T	E	Y	F	K	K	N	M	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																			T	T	S			S	S		T	T	T								S	S	S		S	S											S
	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330
Sequence	R	Q	L	V	L	F	M	C	N	I	V	Q	R	P	E	A	K	E	L	A	E	D	F	E	K	E	L	D	N	F	Y	D	F	Y	I	S	N	V	V	S	F	F	T	N	M	V	D	L	F	N	T	M	V	I	T	N	M	I	L	K	L	K	D	M	L	N	L	T	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T			S																			T
	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400
Sequence	T	I	K	L	Q	L	N	Q	S	I	A	K	F	Q	A	L	Y	L	R	F	T	E	L	Q	N	P	L	L	L	D	F	I	D	F	S	S	Y	S	L	K	K	F	I	F	H	N	K	E	K	Q	N	N	F	I	N	D	A	T	L	A	R	I	F	V	L	K	N	V	I	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																		T
	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470
Sequence	S	T	L	I	Y	E	V	A	K	K	P	K	W	L	E	L	L	H	N	K	I	W	K	N	H	D	L	F	R	F	E	L	L	Q	L	S	A	I	F	I	I	A	E	I	K	K	D	I	I	K	F	C	W	N	F	I	K	L	E	D	T	L	I	K	Q	S	A	Y	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																											T	T																													T	T		S	T	T
	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540
Sequence	T	S	Y	F	D	F	P	I	K	V	V	T	Q	V	F	V	A	L	L	R	E	A	R	Y	L	V	K	Q	S	L	D	V	L	T	P	V	L	A	G	T	P	D	T	W	I	N	W	V	K	R	V	S	S	Q	N	N	I	L	Y	Q	F	L	I	S	H	P	D	N	S	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T			G	G	G											T																																												T	T	T	T				T
	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610
Sequence	D	L	F	I	S	N	I	I	H	H	M	N	K	I	T	F	M	D	S	H	T	L	A	I	D	L	A	S	L	I	L	Y	W	E	N	K	T	L	L	H	L	R	E	A	C	T	A	F	L	I	R	Y	V	C	A	S	E	L	G	L	R	A	I	N	I	L	S	E	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)
	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670	.	.	.	.	.	.	.	.	.	1680
Sequence	S	D	L	V	Y	F	E	K	F	L	E	N	I	L	Y	Y	C	M	N	A	L	D	V	L	Y	V	F	F	K	N	K	T	K	E	W	I	M	E	N	L	P	T	I	Q	N	L	L	E	K	C	I	V	Q	E	A	L	Q	K	V	L	Q	V	I	M	K	A	I	K	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																															S			S														T	T
	.	.	.	.	.	.	.	.	.	1690	.	.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.	.	.	.	.	.	.	.	1750
Sequence	I	E	E	E	S	P	G	K	T	F	I	Q	M	L	T	S	V	I	T	S	S	V	T	A	G	V	T	L	A	W	V	L	F	M	N	F	N	I	V	P	L	L	T	P	L	M	K	T	F	S	K	L	C	K	D	H	L	E	E	A	R	I	T	T	K	L	L	E	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)
	.	.	.	.	.	.	.	.	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820
Sequence	L	Y	I	L	L	G	D	S	R	R	P	F	L	S	T	V	A	L	L	I	D	H	S	M	D	Q	N	F	L	R	K	I	V	N	M	S	R	S	W	I	P	T	V	K	E	K	A	A	I	L	T	K	M	L	A	F	E	I	R	G	E	P	S	L	S	K	L	F	Y	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T										T	T	T	S																		T				S															T	T
	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.	.	.	1890
Sequence	I	V	L	K	L	F	D	N	N	T	E	I	T	V	R	M	E	Q	P	F	L	G	I	R	K	R	F	M	T	I	L	D	N	S	R	L	Y	Y	V	I	R	D	Q	N	W	E	F	P	W	L	N	Q	A	L	Q	L	L	Y	G	S	F	N	R	N	I	Y	C	L	S	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S													S	S																																										S					S	S
	.	.	.	.	.	.	.	.	.	1900	.	.	.	.	.	.	.	.	.	1910	.	.	.	.	.	.	.	.	.	1920	.	.	.	.	.	.	.	.	.	1930	.	.	.	.	.	.	.	.	.	1940	.	.	.	.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960
Sequence	P	S	I	L	Q	E	Y	L	P	E	N	A	E	M	V	T	E	V	N	D	L	E	L	S	N	F	V	K	G	H	I	A	S	M	Q	G	L	S	S	D	F	I	D	S	L	I	E	I	F	Y	Q	D	P	K	A	I	H	R	A	W	V	T	L	F	P	Q	V	Y	K	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S		S	S	T	T	T			S	S								S	T													T	T														S	S																	T	T	S
	.	.	.	.	.	.	.	.	.	1970	.	.	.	.	.	.	.	.	.	1980	.	.	.	.	.	.	.	.	.	1990	.	.	.	.	.	.	.	.	.	2000	.	.	.	.	.	.	.
Sequence	I	P	K	N	E	K	Y	G	F	V	R	S	I	I	T	L	L	S	S	R	T	N	V	I	N	M	L	L	D	S	I	S	K	I	E	S	L	E	L	P	P	H	L	V	K	Y	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		T																												T	S	S	S					S