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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5xwpB_

Fold library idPDB HeaderMoleculeTitle
c5xwpB_3.09PDB header: rna binding protein/rnaChain: B: PDB Molecule: uncharacterized protein;


Added to library: Sat Sep 16 08:29:21 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SXKVTKVGGISHKKYTSEGRLVKSESEENRTDERLSALLNXRLDXYIKNPSSTETKENQKRIGKLKKFFS
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Known secondary structure (DSSP)



SSSSS

SS
BTTB



TT
SGGG



STTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence NKXVYLKDNTLSLKNGKKENIDRSDVRDKKNFAVLKKIYLNENVNSEELEVFRNDIKKKLNKINSLKYSF
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Known secondary structure (DSSP) TT
S


S



SSSTTTT



GGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence EKNKANYQKINENNIEKVEGKSKRNIIYDYYRESAKRDAYVSNVKEAFDKLYKEEDIAKLVLEIENLTKL
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Known secondary structure (DSSP)



TT
ST
SGGG

SS

SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence EKYKIREFYHEIIGRKNDKENFAKIIYEEIQNVNNXKELIEKVPDXSELKKSQVFYKYYLDKEELNDKNI
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Known secondary structure (DSSP) TTTT
SSSTT

TSTTS


 .........290.........300.........310.........320.........330.........340.........350
Sequence KYAFCHFVEIEXSQLLKNYVYKRNDKIKRIFEYQNLKKLIENKLLNKLDTYVRNCGKYNYYLQDGEIATS
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Known secondary structure (DSSP) TTT

TTTTTTTS

TT
B

 .........360.........370.........380.........390.........400.........410.........420
Sequence DFIARNRQNEAFLRNIIGVSSVAYFSLRNILETENENDITGRXRGKTVKNNKGEEKYVSGEVDKIYNENK
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Known secondary structure (DSSP) TTT


SS

SS
SS


TTS



TTTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence KNEVKENLKXFYSYDFNXDNKNEIEDFFANIDEAISSIRHGIVHFNLELEGKDIFAFKNIAPSEISKKXF
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Known secondary structure (DSSP) S
S


SS
SS

TT

GGGGGG
TT



 .........500.........510.........520.........530.........540.........550.........560
Sequence QNEINEKKLKLKIFRQLNSANVFRYLEKYKILNYLKRTRFEFVNKNIPFVPSFTKLYSRIDDLKNSLGIY
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Known secondary structure (DSSP) T
TTTTTSS


B
SS



SS


TTTT

 .........570.........580.........590.........600.........610.........620.........630
Sequence WKTPKTNDDNKTKEIIDAQIYLLKNIYYGEFLNYFXSNNGNFFEISKEIIELNKNDKRNPKEYLANIQSL
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Known secondary structure (DSSP)





S
TSTTSST

 .........640.........650.........660.........670.........680.........690.........700
Sequence YXINADTYIDFIQKIFLKGFXTYLANNGRLSLIYIGSDEETNTSLAEKKQEFDKFLKKYEQNNNIKIPYE
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Known secondary structure (DSSP)


SSS
SGGG
SS

TTTS
S


 .........710.........720.........730.........740.........750.........760.........770
Sequence INEFLREIKLGNILKYTERLNXFYLILKLLNHKELTNLKGSLEKYQSANKEEAFSDQLELINLLNLDNNR
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Known secondary structure (DSSP) T

BSS




TTS
T

TTTTTTTS
 .........780.........790.........800.........810.........820.........830.........840
Sequence VTEDFELEADEIGKFLDFNGNKVKDNKELKKFDTNKIYFDGENIIKHRAFYNIKKYGXLNLLEKIADKAG
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Known secondary structure (DSSP)

S




GGGBTTB


S
TT
SSB
SSSB




T
 .........850.........860.........870.........880.........890.........900.........910
Sequence YKISIEELKKYSNKKNEIEKNHKXQENLHRKYARPRKDEKFTDEDYESYKQAIENIEEYTHLKNKVEFNE
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Known secondary structure (DSSP)

TTTTS
SSGGG
STT
 .........920.........930.........940.........950.........960.........970.........980
Sequence LNLLQGLLLRILHRLVGYTSIWERDLRFRLKGEFPENQYIEEIFNFENKKNVKYKGGQIVEKYIKFYKEL
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Known secondary structure (DSSP)
SS
SGGGGGG
S
TTS
SS

SSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence HQNDEVKINKYSSANIKVLKQEKKDLYIANYIAAFNYIPHAEISLLEVLENLRKLLSYDRKLKNAVXKSV
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Known secondary structure (DSSP) STTT
GGGGGGST
GGGTT
SS
TTTS
 .........1060.........1070.........1080.........1090.........1100.........1110....
Sequence VDILKEYGFVATFKIGADKKIGIQTLESEKIVHLKNLKKKKLXTDRNSEELCKLVKIXFEYKXE
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Known secondary structure (DSSP) T
SSS

STT
SSS
SS
T




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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