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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5xu1M_

Fold library idPDB HeaderMoleculeTitle
c5xu1M_3.30PDB header: transport proteinChain: M: PDB Molecule: abc transporter permeae;


Added to library: Sat Jan 27 09:23:17 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QNLKFAFSSIMAHKMRSLLTMIGIIIGVSSVVVIMALGDSLSRQVNKDMTKSQKNISVFFSPKKPPKPQE
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Known secondary structure (DSSP)
TGGG
S






 .........80.........90.........100.........110.........120.........130.........140
Sequence SWVQEAAKLKGVDSYYVTNSTNAILTYQDKKVENANLTGGNRTYMDAVKNEIIAGRSLREQDFKEFASVI
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Known secondary structure (DSSP) TTSTT



TT
S

STT




TT

 .........150.........160.........170.........180.........190.........200.........210
Sequence LLDEELSISLFESPQEAINKVVEVNGFSYRVIGVYTSPEAKRSKIYGFGGLPITTNISLAANFNIDEIAS
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Known secondary structure (DSSP) SSTT
SSS

TTTTT
S


SS

S
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence IVFRVNDTSLTPTLGPELARKMTELAGLQQGEYQVADESVVFAEIQQSFSFMTTIISSIAGISLFVGGTG
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Known secondary structure (DSSP)
SSGGG


SS


S
 .........290.........300.........310.........320.........330.........340.........350
Sequence VMNIMLVSVTERTREIGLRKALGATRANILIQFLIESMILTLLGGLIGLTIASGLTALAGLLLQGLIEGI
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Known secondary structure (DSSP) TT

TTTTTT

S
 .........360.........370.........380.........390
Sequence EVGVSIPVALFSLAVSASVGMIFGVLPANKASKLDPIEAL
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Known secondary structure (DSSP)




T



Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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