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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5xsyA_

Fold library idPDB HeaderMoleculeTitle
c5xsyA_4.00PDB header: membrane proteinChain: A: PDB Molecule: sodium channel protein;


Added to library: Sat Aug 12 08:48:43 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PIRRGAIRVFVNSAFNFFIMFTIFSNCIFMTISNPPAWSKIVEYTFTGIYTFEVIVKVLSRGFCIGHFTF
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Known secondary structure (DSSP)
T
STTS


SSS
SS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence LRDPWNWLDFSVVTMTYITEFRTFRVLRALKTITIFPGLKTIVRALIESMKQMGDVVILTVFSLAVFTLA
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Known secondary structure (DSSP) TTSTT


TTGGGGG
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence GMQLFMGNLRHKCIRWPISNVTLDYESAYNTTFDFTAYIENEENQYFLDGALDALLCGNNSDAGKCPEGY
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Known secondary structure (DSSP) TTSTT





SS
TT

SS

SSSTT
TTTS


SS
SS





SSSS



TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence TCMKAGRNPNYGYTNYDNFAWTFLCLFRLMLQDYWENLYQMTLRAAGKSYMVFFIMVIFLGSFYLINLIL
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Known secondary structure (DSSP) S
S

STTTTT

SSTSST
GGGGT
 .........290.........300.........310.........320.........330.........340.........350
Sequence AVVAMAYEEQNQATLAEAQEKEAEFQRAVEQLRNCCGPWVFLKKWVHFVMMDPFTDLFITLCIILNTLFM
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Known secondary structure (DSSP) T


SGGGTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence SIEHHPMNESFQSLLSAGNLVFTTIFAAEMVLKIIALDPYYYFQQTWNIFDSIIVSLSLLELGLSGMSVL
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Known secondary structure (DSSP)


SS

TTSTS


GGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence RSLRLLRIFKLAKSWPTLNILIKIICNSVGALGNLTIVLAIIVFIFALVGFQLFGKNYKEYVCKISDDCE
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Known secondary structure (DSSP) GGGGGGGTTTSSSTTTTTSGGGTSSSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence LPRWHMNDFFHSFLIVFRALCGEWIETMWDCMEVGGVPMCLAVYMMVIIIGNLVMLNLFLALLLSSFGKI
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Known secondary structure (DSSP)

SS
SSST

S



 .........570.........580.........590.........600.........610.........620.........630
Sequence WWNLRRTCYTIVEHDYFETFIIFMILLSSGVLAFEDIYIWRRRVIKVILEYADKVFTYVFIVEMLLKWVA
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Known secondary structure (DSSP) STT
SGGGGT
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence YGFKRYFTDAWCWLDFVIVGASIMGITSSLIKNLRTIRALRPLRALSRFEGMKVVVRALLGAIPSIMNVL
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Known secondary structure (DSSP) SSTGGG


TTTTGGGT
 .........710.........720.........730.........740.........750.........760.........770
Sequence LVCLMFWLIFSIMGVNLFAGKFYRCINTTTDEILPVEEVNNRSDCMALMYTNEVRWVNLKVNYDNAGMGY
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Known secondary structure (DSSP) TT


TTT

B

SSS
SBSTTS


SSSSSSTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence LSLLQVSTFKGWMDIMYAAVDSREVEDQPIYEINVYMYLYFVIFIVFGAFFTLNLFIGVIIDNFNRQKQK
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Known secondary structure (DSSP) TTTTSSS


SSB


SSS
GGGTTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence LGGEDLFMTEEQKKYYNAMKKLGSKKAAKCIPRPSNVVQGVVYDIVTQPFTDIFIMALICINMVAMMVES
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Known secondary structure (DSSP) T
SS
SS

S











TTSST
GGG

 .........920.........930.........940.........950.........960.........970.........980
Sequence EDQSQVKKDILSQINVIFVIIFTVECLLKLLALRQYFFTVGWNVFDFAVVVISIIGLLLSDIISPTLFRV
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Known secondary structure (DSSP) SS

TTS

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence IRLARIARVLRLIRAAKGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVKKQGGVDDIFNF
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Known secondary structure (DSSP) GGGGGGGGGGSTTTSS



TT
SSSSSS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence ETFGNSMICLFEITTSAGWDGLLLPTLNTGPPDCDPDVENPGTDVRGNCGNPGKGITFFCSYIILSFLVV
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Known secondary structure (DSSP) SSTT
S

SSSS


S
B
SSSS
B




 .........1130.........1140
Sequence VNMYIAIILENFGVAQEESS
Predicted secondary structure
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Known secondary structure (DSSP) TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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