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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5xonW_

Fold library idPDB HeaderMoleculeTitle
c5xonW_3.83PDB header: transcription/rnaChain: W: PDB Molecule: protein that forms a complex with spt4p;


Added to library: Sat Aug 19 08:32:50 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PQRLLIPTVDDPGIWGVKVRLGKEKDVVRQILKKKLAREGTKNPLEIYSAFQRDSFKGHVYIEARKAEAI
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Known secondary structure (DSSP)
GGGG


TTS
B
TT
TTSSS




TTSTTSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence NDALKGNVNVFSNNSKFLVGIVEYKDLLRPVSDVKLTRGSYVRVKNGKFKGDLAQVDEVLENGLEARLKL
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Known secondary structure (DSSP) TT
TTB
SS



GGGT








TT

SSTTTT

SSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence VPRLDYGKDLSYTSKFRPAQRLFSEAEARVHEIRRDRDGFVTYGGEEYYEGFLYKTFRLQNLIVNSINPT
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Known secondary structure (DSSP)




TTTT



GGG









TTTTTTGGG
SS



 .........220.........230.........240.........250.........260.........270.........280
Sequence LNELSLFEVKVGDTVREFTGERRQGTILHVYRNFLFLRSREIVENQGVFVTSSNRVGRDPTLNKTVKIRQ
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Known secondary structure (DSSP)


STTSBSSSSS
S




SS
SSS

TTT


SSSTT

S
 .........290.........300.........310.........320.........
Sequence GGYKGKIGIVKEANGDRFRVELHNPNKTIPIPCSFLLIESTHGWVPYED
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Known secondary structure (DSSP) STTTT

SSSSSSS
GGG
SSS
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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