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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5xlrC_

Fold library idPDB HeaderMoleculeTitle
c5xlrC_3.80PDB header: viral proteinChain: C: PDB Molecule: spike glycoprotein;


Added to library: Sat Jun 10 08:23:00 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence HTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTGNPVIPFKDGIYFAATEKSNVVRGWVFGSTM
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Known secondary structure (DSSP)








SS


SSS



TT





S



SS

TT



SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence NNKSQSVIIINNSTNVVIRACNFEHTMIFDNAFNCTFEYISDAKHLREFVFKNKDGFLYVYKGYQPIDVV
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Known secondary structure (DSSP) SSSS
SSSSS





STTS

SS








TT



SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence RDLPSGFNTLKPIFKLPLGINITNFRAILTAFAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAEL
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Known secondary structure (DSSP) S





S






B

















GGG




SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence KCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLY
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Known secondary structure (DSSP) T
SS


B




S




TTS
S



STT

S





TTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence NSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTR
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Known secondary structure (DSSP) S
TT
SSSS
SSS
TT

B
GGGGGGSSSS


ST



SS



T
 .........360.........370.........380.........390.........400.........410.........420
Sequence NIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRV
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Known secondary structure (DSSP) TTS

SS







SS


TT









TTS



TTSTT


S



TTS
STTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence VVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPK
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Known secondary structure (DSSP)
SSSS

B

S







SSTT




TTS
S

TT




TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence TSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCL
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Known secondary structure (DSSP) S
SSS
S
SSS
S


S

STTT
BTT

SS





B

SSSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence IGAEHVDTSYECDIPIGAGICASYVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDC
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Known secondary structure (DSSP) S

B
SS



STTT


S











SS

S







T
 .........640.........650.........660.........670.........680.........690.........700
Sequence NMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPD
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Known secondary structure (DSSP) TTTTTTT
S
S


SS




S

BSSSSB
TTTS

 .........710.........720.........730.........740.........750.........760.........770
Sequence PLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGW
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Known secondary structure (DSSP) TTTT
SS
TT












SSS


SS
SS
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence TFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNA
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Known secondary structure (DSSP)

TTSS




T

TTTTS
SSTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA
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Known secondary structure (DSSP) S


SSS
S
TTTS
SSTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence TKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFV
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Known secondary structure (DSSP) TSS


STTTSSSSB


TT



B



SSS


TTS
 .........990.........1000.........1010.........1020..
Sequence FNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVY
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Known secondary structure (DSSP) BSSS

SSS


B


GGG

S


SSS








Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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