Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5xjyA_

Fold library idPDB HeaderMoleculeTitle
c5xjyA_4.10PDB header: transport proteinChain: A: PDB Molecule: atp-binding cassette sub-family a member 1;


Added to library: Sat Jun 17 13:34:10 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence CWPQLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFPNKAMPSAGTLPWVQG
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)
TTSSTS




B



B

TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence IICNANNPCFRYPTPGEAPGVVGNFNKSIVARLFSDARRLLLYSQKDTSMKDMRKVLRTLQQIKKSSSNL
Predicted secondary structure







































SS confidence





































































Known secondary structure (DSSP) T
SS



SS

GGGSSS




SS
TT

TTS





 .........150.........160.........170.........180.........190.........200.........210
Sequence KLQDFLVDNETFSGFLYHNLSLPKSTVDKMLRSKSEEMIQLGDQEVSELCGLPREKLAAAERVLRSNMDI
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) SS




SS
TT


SSSTS




TTT
SSSSS
T
 .........220.........230.........240.........250.........260.........270.........280
Sequence LKPILRTLNSTSPFPSKELAEATKTLLHSLGTLAQELFSMRSWSDMRQEVMFLTNVNSSSSSTQIYQAVS
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP)
TTTTTTSS
T
TTTTTSSS


SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence RIVCGHPTPYCNDLMKNLESSPLSRIIWKALKPLLVGKILYTPDTPATRQVMAEVNKTFQELAVFHDLEG
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) S



STT
ST


S


TT
SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence MWEELSPKIWTFMENSQEMDLVRMLLDSRDNDHFWEQQLDGLDWTAQDIVAFLAKHPEDVQSSNGSVYTW
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) TTT
TS
STTT
S
S
TT

SS
S
SSS


S
 .........430.........440.........450.........460.........470.........480.........490
Sequence REAFNETNQAIRTISRFMECVNLNKLEPIATEVWLINKSMELLDERKFWAGIVFTGITPGSIELPHHVKY
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) TTS





B

S
TT







SS

S


SSB

 .........500.........510.........520.........530.........540.........550.........560
Sequence KIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVLTGTEKKTGVYMQQMPY
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP)

TTTS

SS
SS
SS







TTTT
TTT








B
 .........570.........580.........590.........600.........610.........620.........630
Sequence PCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLKETMRIMGLDNSILWFSWFISSLIPLL
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP)



TTTTT

 .........640.........650.........660.........670.........680.........690.........700
Sequence VSAGLLVVILKLGNLLPYSDPSVVFVFLSVFAVVTILQCFLISTLFSRANLAAACGGIIYFTLYLPYVLC
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) TTTS

SS
TTTT

STTTGGG
 .........710.........720.........730.........740.........750.........760.........770
Sequence VAWQDYVGFTLKIFASLLSPVAFGFGCEYFALFEEQGFNLTTSVSMMLFDTFLYGVMTWYIEAVFNLVKV
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP) SSS



STS
STSS



TT


 .........780.........790.........800.........810.........820.........830.........840
Sequence YRALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYILGKDIRSEMSTIRQNLGVCPQHNVLFDM
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)



S
SS

B


SSTTSS
SS
SSS



SSSSGGGTTTTTTT


SS



TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence LTVEEHIWFYARLKGLSEKHVKAEMEQMALDVGLPSSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILD
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) S
S
TTTS
S

TTTS
STSSS

SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence EPTAGVDPYSRRGIWELLLKYRQGRTIILSTHHMDEADVLGDRIAIISHGKLCCVGSSLFLKNQLLTLVK
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)



S
GGGGGGSS



S
SS
S
SSSS


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence KDVESSLSSCRNSSSTVSYDAGLGSDHESDTLTIDVSAISNLIRKHVSEARLVEDIGHELTYVLPYEAAK
Predicted secondary structure














































SS confidence





































































Known secondary structure (DSSP) TTSSS










TTTTTTTT

B
SSSB



SS

TTTSTT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence EGAFVELFHDLGISSYGWKLTQQQFVALLWKRLLIARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKY
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) SS




B


B





T
SSSS
TTS

S


 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence PSLELQPWMYNEQYTFVSNDAPEDTGTLELLNALTKDPGFGTRCMEGNPIPDTPCQAGEEEWTTAPVPQT
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)





SS
SSS





S
S
SSSSTTTTS


SS

STTT




S
SS






S
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence IMDLFQNGNWTMQNPSPACQCSSDKIKKMLPVCPPGAGGLPPPQRKQNTADILQDLTGRNISDYLVKTYV
Predicted secondary structure



SS confidence





































































Known secondary structure (DSSP) TT

SSS
S






SSS

SS


SS
SS
S




B
SS
B




SS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence QIIAKSLKNKIWVNEFRYGGFSLGVSNTQALPPSQEVNDAIKQMKKHLKLAKDSSADRFLNSLGRFMTGL
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) TTS



S








SSS
TTT


SSSTTS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence DTKNNVKVWFNNKGWHAISSFLNVINNAILRANLQKGENPSHYGITAFNHPLNLTKQQLSEVALMTTSVD
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP)

SS

SSSTT

S
S
SSS

B

B






 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence VLVSICVIFAMSFVPASFVVFLIQERVSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICF
Predicted secondary structure




SS confidence





































































Known secondary structure (DSSP) TTTSTTTSS

TS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence QQKSYVSSTNLPVLALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELNNIN
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP)
SS

SSTTTSTSTTSSS

STT
T




 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence DILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVEGVVFFLITVLI
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) SSSSS

SSS





SSSTTTTTT
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence QYRFFELTKIYRCVGIPPGECFGLLGVNGAGKSSTFKMLTGDTTVTRGDAFLNKNSILSNIHEVHQNMGY
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP) T



B



B


SS



B

SS
STTTSSS
S
TTS

S
SS

STT
SSSTTTS

 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence CPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEKYAGNYSGGNKRKLSTAMALI
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)

SS



TTS
TT
S
TTGGGSTTTTTT
STTTTSS
S


TTT
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence GGPPVVFLDEPTTGMDPKARRFLWNCALSVVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQH
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) T

SS


BS

SS
TTTTS




B
S

SS
B

SSSS





 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence LKNRFIVVRIAGSNPFGLAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTL
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)





TSSS






SS


B



SS
TTTTSTTT
 .........1900.
Sequence DQVFVHLKDLS
Predicted secondary structure
SS confidence










Known secondary structure (DSSP)






B



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D