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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5xj0D_

Fold library idPDB HeaderMoleculeTitle
c5xj0D_4.00PDB header: transferase/transcriptionChain: D: PDB Molecule: dna-directed rna polymerase subunit beta';


Added to library: Sat Dec 23 09:38:28 2017
 
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 1........10.........20.........30.........40.........50.........60.........70
Sequence KKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDKSIVRRYRMGHIELAT
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SS

B
SSSSSB
TT
TT


S


TTTTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence PAAHIWFVKDVPSKIGTLLDLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQE
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Known secondary structure (DSSP)
SSS
SSSSTTTSS

S




SSSS

TT

T



 .........150.........160.........170.........180.........190.........200.........210
Sequence TYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYK
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Known secondary structure (DSSP)

TT

SSTT

S


TT

SBTTB


S
S
SB





B
B

SSS



TT

 .........220.........230.........240.........250.........260.........270.........280
Sequence PGEILAELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATYFLPVGMTPLVVHGEIVEKGQPLAEA
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Known secondary structure (DSSP) TT






S











SS
SSSS


SSS


SS

TTTT







 .........290.........300.........310.........320.........330.........340.........350
Sequence KGLLRMPRQVRAAQVEAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEEV
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Known secondary structure (DSSP)
S




TT


TT





TT

S
SS



TT



SSSTT
B
 .........360.........370.........380.........390.........400.........410.........420
Sequence IAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVV
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Known secondary structure (DSSP)


S



BS





SS



TT
SS
S

BTTTTB


S

SSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence ESYDIDARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAV
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Known secondary structure (DSSP) S





SS

SS
TTTTTS

GGGG
 .........500.........510.........520.........530.........540.........550.........560
Sequence PVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRR
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Known secondary structure (DSSP)

GGGS

SSS

T



SSSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence GAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFL
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Known secondary structure (DSSP) S


SSSS

S



TTGGGSSSSTT



SS
TTS
TTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence LKKMEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQ
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Known secondary structure (DSSP) STT
SSTSSGGG

TT


SS

SGGGSSSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence LHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRK
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Known secondary structure (DSSP)
GGGTTTTT

TTT



STSBGGG

B
SSSSSBSS


S



 .........780.........790.........800.........810.........820.........830.........840
Sequence EKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGIVDLQDVVTVR
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Known secondary structure (DSSP)



S



SS
STTTS

SSS

SS


S
TTSS
TTS
 .........850.........860.........870.........880.........890.........900.........910
Sequence YMGKRLETSPGRILFARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYY
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Known secondary structure (DSSP)
SSS
SS
T

TTS



S
 .........920.........930.........940.........950.........960.........970.........980
Sequence GFTFSTTSGITIGIDDAVIPEEKKQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEKVTQAV
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Known secondary structure (DSSP) T




GGGS


TTTSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence FKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGA
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Known secondary structure (DSSP)
TT
SSSS

T




B
SSS
B
SS




SSS


 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence RKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKRADIEAGLYGR
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Known secondary structure (DSSP) SSSSTT

S






SB


SSSS


B

TT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence VLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGVCQKCYGYDLSMARPVSI
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Known secondary structure (DSSP) SS

SS

TT
B

TTS
S
STT

STTSTTTS
S
SSSSS


T
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence GEAVGIVAAQSIGEPGTQLTMGLPRVIELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEY
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Known secondary structure (DSSP) T

GGGGG



TT


SS


B
SS



SS


SS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence KLPKEARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVR
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Known secondary structure (DSSP)

TT

BSS
TT

TT
B
BSS



TT



 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence QMMKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNT
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Known secondary structure (DSSP) TTS
SSS
SS

SSS










S
TTSS
 .........1410.........1420.........1430.........1440.........1450.........1460..
Sequence THVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARKEAVEA
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Known secondary structure (DSSP) TT


STT


SSGGG
S




TTTTTTS


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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