PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5xazD_

Fold library id	PDB Header	Molecule	Title
c5xazD_	2.30	PDB header: dna binding protein	Chain: D: PDB Molecule: gamma-butyrolactone receptor protein;

Links to external resources
Added to library: Sat Aug 5 10:36:31 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A R Q E R A A Q T R R T I V A A A A A V F D E L G Y E A T T I A E I L K R S G V T K G A L Y F H F T S K E Q L A Q E V L T S Q L R A E Q R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S
T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V L Q Q I I D E T L L L A Q L L S K G D P L V R G S V R L T V E P G D G L D R R A P M Q E W I G H G R D L L R R A E A G G E L L P R L D V D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T T
B
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A V A R M L V G G F T G A Q I L S N I L T G H A D L L E R V T D M H R H L M T S V A V P A V L V R L D F S A E R S I T V Y D E A M R R R E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T B
T T

. . . . . . . . . 220

Sequence P L P A A G D L E H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G B

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	R	Q	E	R	A	A	Q	T	R	R	T	I	V	A	A	A	A	A	V	F	D	E	L	G	Y	E	A	T	T	I	A	E	I	L	K	R	S	G	V	T	K	G	A	L	Y	F	H	F	T	S	K	E	Q	L	A	Q	E	V	L	T	S	Q	L	R	A	E	Q	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																								B										S													T	T					S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	L	Q	Q	I	I	D	E	T	L	L	L	A	Q	L	L	S	K	G	D	P	L	V	R	G	S	V	R	L	T	V	E	P	G	D	G	L	D	R	R	A	P	M	Q	E	W	I	G	H	G	R	D	L	L	R	R	A	E	A	G	G	E	L	L	P	R	L	D	V	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T													S																												T	T		B		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	V	A	R	M	L	V	G	G	F	T	G	A	Q	I	L	S	N	I	L	T	G	H	A	D	L	L	E	R	V	T	D	M	H	R	H	L	M	T	S	V	A	V	P	A	V	L	V	R	L	D	F	S	A	E	R	S	I	T	V	Y	D	E	A	M	R	R	R	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						T	T	T	T																	B						T	T
	.	.	.	.	.	.	.	.	.	220
Sequence	P	L	P	A	A	G	D	L	E	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					G	G	G	B