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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5x5fC_

Fold library idPDB HeaderMoleculeTitle
c5x5fC_3.20PDB header: viral proteinChain: C: PDB Molecule: s protein;


Added to library: Sat May 6 08:21:58 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YVDVGPDSVKSACIEVDIQQTFFDKTWPRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMYVY
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Known secondary structure (DSSP)









SB



GGGS








GGGTTT
B

SS


SS


TT




 .........80.........90.........100.........110.........120.........130.........140
Sequence SAGHATGTTPQKLFVANYSQDVKQFANGFVVRIGAAANSTGTVIISPSTSATIRKIYPAFMLGSSVGNFS
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Known secondary structure (DSSP)

B
SS
B
S
SGGG


TT
STTTTS
SSSTT





S

T
 .........150.........160.........170.........180.........190.........200.........210
Sequence DGKMGRFFNHTLVLLPDGCGTLLRAFYCILEPRSGNHCPAGNSYTSFATYHTPATDCSDGNYNRNASLNS
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Known secondary structure (DSSP) TS

STTTT

SBTSTTSTT





S
TT


TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence FKEYFNLRNCTFMYTYNITEDEILEWFGITQTAQGVHLFSSRYVDLYGGNMFQFATLPVYDTIKYYSIIP
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Known secondary structure (DSSP)






TTSTTT
TTT

B


S




 .........290.........300.........310.........320.........330.........340.........350
Sequence HSIRSIQSDRKAWAAFYVYKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFE
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Known secondary structure (DSSP)


GGG





TTS

S
S
SS


SS




B
 .........360.........370.........380.........390.........400.........410.........420
Sequence AKPSGSVVEQVECDFSPLLSGTPPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSS
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Known secondary structure (DSSP) B


S







SB


BGGG

S
SSS


BS
 .........430.........440.........450.........460.........470.........480.........490
Sequence LILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRLLSDD
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Known secondary structure (DSSP)

GGGGGGS
TT

ST



SSS


SS

SB


S
TTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence RTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTD
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Known secondary structure (DSSP) S




TTS

TTTTTS
SS
SSTT


TTTTSS

SS


SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence TNSVCPKLKIASQLGNCVEYSLYGVSGRGVFQNCTAVGVRQQRFVYDAYQNLVGYYSDDGNYYCLRACVS
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Known secondary structure (DSSP)






SSS


SS

SS










S
SSS


B
SSS
B




SSS






B
 .........640.........650.........660.........670.........680.........690.........700
Sequence VPVSVIYDKETKTHATLFGSVACEHISSTMSQYSRSTRSMLKPVGCVLGLVNSSLFVEDCKLPLGQSLCA
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Known secondary structure (DSSP)


B

TTTT



B
SS

TTT

TT
TTBS
SSSS



B

SSS
BSS










TT

SS
 .........710.........720.........730.........740.........750.........760.........770
Sequence LPDTPSTMRLASIAFNHPIQVDQLNSSYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ
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Known secondary structure (DSSP) S























SS












B








TTSSSSSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPVARSAIEDLLFDK
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Known secondary structure (DSSP) TTTT
SS





S

BTTB

TTS





S
 .........850.........860.........870.........880.........890.........900.........910
Sequence VTIADPGYMQGYDDCMQQICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQS
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Known secondary structure (DSSP) S





SSST


TTTS
S



SS
TT
S


-




 .........920.........930.........940.........950.........960.........970.........980
Sequence IFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTTNEAFQKVQDAVNNNAQALSKLASELSNTFG
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Known secondary structure (DSSP) SS


TT

S

TTT
TTSSS
S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence AISASIGDIIQRLDVLEQDAQIDRLINGRLTTLNAFVAQQLVRSESAALSAQLAKDKVNECVKAQSKRSG
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Known secondary structure (DSSP) SS
SSSTTSSSSS
TTS

SSST
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence FCGQGTHIVSFVVNAPNGLYFMHVGYYPSNHIEVVSAYGLCDAANPTNCIAPVNGYFIKTNNTRIVDEWS
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Known secondary structure (DSSP) TS
SSS

B


SSS
BB









S



SS





SSS



SSSS



SSS

 .........1130.........1140.
Sequence YTGSSFYAPEPITSLNTKYVA
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SS confidence




















Known secondary structure (DSSP)



SSS






SSTTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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