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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5x5bB_

Fold library idPDB HeaderMoleculeTitle
c5x5bB_3.20PDB header: viral proteinChain: B: PDB Molecule: spike glycoprotein;


Added to library: Sat May 6 08:22:47 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGI
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Known secondary structure (DSSP)




S







SS



SS



S


TT


BTTB






S
 .........80.........90.........100.........110.........120.........130.........140
Sequence YFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAF
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Known secondary structure (DSSP)



SS



SSSSSSS


SS


SS



B
SSS

B


TT
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence NCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGIN
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Known secondary structure (DSSP)




S


SS

SS

SSS











 .........220.........230.........240.........250.........260.........270.........280
Sequence ITNFRAILTAFSTWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQ
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Known secondary structure (DSSP)




B





S



SSS
TTT
T
SS

S

 .........290.........300.........310.........320.........330.........340.........350
Sequence TSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSA
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Known secondary structure (DSSP)







B




S
SS

STS
S



STT


S

S


SB



SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence TKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYR
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Known secondary structure (DSSP) TT


S

GGGSTTSSSS
TTSSTTTSS


SSS



TTTT

TT

TTS

B
 .........430.........440.........450.........460.........470.........480.........490
Sequence YLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVC
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Known secondary structure (DSSP)


SS


TT







B
SS

B

TTSTT


SB





TTS
GGGS


S
SS

S
 .........500.........510.........520.........530.........540.........550.........560
Sequence GPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGV
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Known secondary structure (DSSP)
S






SSS
B


TTS




B

B





TT



TTS



TTT


B






 .........570.........580.........590.........600.........610.........620.........630
Sequence SVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIP
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Known secondary structure (DSSP)


TTT






SS
TTTTTT
SSS

SS



SS



SSS


SSB

S




S
 .........640.........650.........660.........670.........680.........690.........700
Sequence IGAGICASYHTKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTE
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Known secondary structure (DSSP)
SSSS







S







SS



B







SS
 .........710.........720.........730.........740.........750.........760.........770
Sequence CANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFI
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Known secondary structure (DSSP) TS
STTTTTTTSSS




S


SSS


TTS

TTT
SSSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence EDLLFNKVTLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGI
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Known secondary structure (DSSP) TTS







TT


SS
T
SSS




 .........850.........860.........870.........880.........890.........900.........910
Sequence GVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLND
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Known secondary structure (DSSP) TS
STTTSS
SSSTTS

SSSS
S
 .........920.........930.........940.........950.........960.........970.........980
Sequence ILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHL
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Known secondary structure (DSSP) TTTSTTSS


STTTSSSSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence MSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDN
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Known secondary structure (DSSP) TT

B



SS


SSS

SS


TTTT

TTT
 ...
Sequence TFV
Predicted secondary structure
SS confidence


Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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