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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5x0mA_

Fold library idPDB HeaderMoleculeTitle
c5x0mA_3.80PDB header: membrane proteinChain: A: PDB Molecule: sodium channel protein;


Added to library: Tue Mar 14 11:16:32 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DKGRGANKDRDGSAHPDQALEQGSRLPARMRNIFPAELASTPLEDFDPFYKNKKTFVVVTKAGDIFRFSG
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Known secondary structure (DSSP)
TT

BTTB





SS

S



SSS


S
S
STT
 .........80.........90.........100.........110.........120.........130.........140
Sequence EKSLWMLDPFTPIRRVAISTMVQPIFSYFIMITILIHCIFMIMPATQTTYILELVFLSIYTIEVVVKVLA
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Known secondary structure (DSSP)

TT


SSSS
S
S

 .........150.........160.........170.........180.........190.........200.........210
Sequence RGFILHPFAYLRDPWNWLDFLVTLIGYITLVVDLGHLYALRAFRVLRSWRTVTIVPGWRTIVDALSLSIT
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Known secondary structure (DSSP) S
SSSSTTSTTTTTS

TTS
S
TTGGGGGGGGGGGGGSTTTTTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence SLKDLVLLLLFSLFVFAVLGLQIYMGVLTQKCVKHFPADGSWGNFTDERWFNYTSNSSHWYIPDDWIEYP
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Known secondary structure (DSSP) STTTTT



TTSSS
SS
SSSTTSTTSB

SS

SS

 .........290.........300.........310.........320.........330.........340.........350
Sequence LCGNSSGAGMCPPGYTCLQGYGGNPNYGYTSFDTFGWAFLSVFRLVTLDYWEDLYQLALRSAGPWHILFF
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Known secondary structure (DSSP)



STTS



SSSS
S

TTTS


S
ST
SS
TTTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence IIVVFYGTFCFLNFILAVVVMSYTHMVKRADEEKAAERECVPWQKLQGAIGAVVLSPFFELFIAVIIVLN
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Known secondary structure (DSSP) TTTTTT

STT
 .........430.........440.........450.........460.........470.........480.........490
Sequence ITFMALDHHDMNIEFERILRTGNYIFTSIYIVEAVLKIIALSPKFYFKDSWNVFDFIIVVFAILELGLEG
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Known secondary structure (DSSP) TT

SS

S
TTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence VQGLSVFRSFRLLRVFRLAKFWPTLNNFMSVMTKSYGAFVNVMYVMFLLLFIFAIIGMQLFGMNYIDNME
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Known secondary structure (DSSP)


GGGGGGGGGGGGG
STT
SSTGGG
S
 .........570.........580.........590.........600.........610.........620.........630
Sequence RFPDGDLPRWNFTDFLHSFMIVFRALCGEWIESMWDCMLVGDWSCIPFFVAVFFVGNLVILNLLIALLLN
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Known secondary structure (DSSP) SSSS
S

TT
SSST


STTTTTTTTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence NYGSARDSSVQRMWSNIRRVCFLLAKNKYFQKFVTAVLVITSVLLALEDIYLPQRPVLVNITLYVDYVLT
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Known secondary structure (DSSP)




T
TTSSSSSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence AFFVIEMIIMLFAVGFKKYFTSKWYWLDFIVVVAYLLNFVLMCAGIEALQTLRLLRVFRLFRPLSKVNGM
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Known secondary structure (DSSP) T
TTSTTTTSS



TTGGGTTGGGTTTSTTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence QVVTSTLVEAVPHIFNVILVGIFFWLVFAIMGVQLFAGKFYKCVDENSTVLSHEITMDRNDCLHENYTWE
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Known secondary structure (DSSP) TTTTT



BTTT

SSS
SSTTS

B
 .........850.........860.........870.........880.........890.........900.........910
Sequence NSPMNFDHVGNAYLSLLQVATFKGWLQIMNDAIDSREVHKQPIRETNIYMYLYFIFFIVFGSFFILKLFV
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Known secondary structure (DSSP)

SS
SSSSTTSS

STTS


SSS

GGGSTTTTTTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence CILIDIFRQQRRKAEGLSATDSRTQLIYRRAVMRTMSAKPVKRIPKPTCHPQSLMYDISVNRKFEYTMMI
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Known secondary structure (DSSP)

SS

SSS











SSSSTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LIILNVAVMAIDHYGQSMEFSEVLDYLNLIFIIIFFVECVIKVSGLRHHYFKDPWNIIDFLYVVLAIAGL
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Known secondary structure (DSSP) TT

SS
TTTTTTS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence MLSDVIEKYFISPTLLRILRILRVGRLLRYFQSARGMRLLLLALRKALRTLFNVSFLLFVIMFVYAVFGM
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Known secondary structure (DSSP) TS

TT
SSS

GGGGGGGS

SSTTTSTT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence EFFMHIRDAGAIDDVYNFKTFGQSIILLFQLATSAGWDGVYFAIANEEDCRAPDHELGYPGNCGSRALGI
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Known secondary structure (DSSP) TT
S




SS

SSS
SSSSSTTSST

S





SSSS






S
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence AYLVSYLIITCLVVINMYAAVILDYVLEVYEDSKEGLTDDDYDMFFEVWQQFDPEATQYIRYDQLSELLE
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Known secondary structure (DSSP)





S


TT

S
 .........1270.........1280.........1290.........1300.........1310.........1320...
Sequence ALQPPLQVQKPNKYKILSMNIPICKDDHIFYKDVLEALVKDVFSRRGSPVEAGDVQAPNVDEA
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Known secondary structure (DSSP) TS
TTT


SS
TTS


TTT

SS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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