Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5wq9L_

Fold library idPDB HeaderMoleculeTitle
c5wq9L_4.22PDB header: protein transportChain: L: PDB Molecule: type ii secretion system protein d;


Added to library: Sat Feb 11 01:53:41 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GDEVITQVVAVKNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQAGDKE
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP)






SS
GGGGS



TTTTTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence IEVVELNNASAAEMVRIVEALNKFVADERTNSILISGDPKVRERLKRLIKQLDVEMAAKGNNRVVYLKYA
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP)
SSS
T


TTTT
TT








SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence KAEDLVEVLKGVSEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLG
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP)


TTTT

S



 .........220.........230.........240.........250.........260.........270.........280
Sequence VQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVNETTTTKGDYTKLASALSSIQGAAVSIAMG
Predicted secondary structure
































































SS confidence





































































Known secondary structure (DSSP) TTTT

SSSSS
S







TT

ST
 .........290.........300.........310.........320.........330.........340.........350
Sequence DWTALINAVSNDSSSNILSSPSITVMDNGEASFIVAEEVPVITGFQTVDRKEVGIKLKVVPQINEGNSVQ
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) T

TT

















SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence LNIEQEVSNVLDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVE
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)






SS



SSTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence KKNLMVFIKPTIIRDGVTADGITQRKYNYIRAEQLFRAEKGLRLLDDASVPVLPKFGDDRRHSPEIQAFI
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP)


SS

SSS
GGGS



STT





 ...
Sequence EQM
Predicted secondary structure


SS confidence


Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D