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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5wk1C_

Fold library idPDB HeaderMoleculeTitle
c5wk1C_3.60PDB header: virusChain: C: PDB Molecule: major capsid protein;


Added to library: Sat Jan 20 10:37:08 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MQRVDEMYRLVDSTGTGEDRDWGNQTLLGRLLSQAQTVSIGKKVIESRRYSEAGRINRSMSGQTDIDMDK
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S





 .........80.........90.........100.........110.........120.........130.........140
Sequence TKSSYQKMVIPVFDGAYGRDFRDYEAMRSEMLPALAEDSEEIEFTLLDDVNDYLWNGDAKLKVDTAVWGG
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TT


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 .........150.........160.........170.........180.........190.........200.........210
Sequence LKADASVAAYSLGADLTTATEAQVVAELLALLDVLRITNKKSGPFELYISPQIMSNWQKLAGANTNGFMN
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Known secondary structure (DSSP) TTT
TTS


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TTT

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 .........220.........230.........240.........250.........260.........270.........280
Sequence IMAAVRALIPEFSVVEADSALQGNQVLCSVVGTRGLHAKIGMMMSSYQVPRVMHNDPYQFVKWFAAGFQS
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Known secondary structure (DSSP) SGGGTTTT



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 .........290....
Sequence NNSFSGLKSTVYGS
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Known secondary structure (DSSP)


TT





Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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