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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5w9pI_

Fold library idPDB HeaderMoleculeTitle
c5w9pI_4.00PDB header: viral proteinChain: I: PDB Molecule: spike glycoprotein;


Added to library: Sat Aug 19 08:30:01 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YVDVGPDSVKSACIEVDIQQTFFDKTWPRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMYVY
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Known secondary structure (DSSP)










S



GGGG








GGGTTT
B

TT



S


TT




 .........80.........90.........100.........110.........120.........130.........140
Sequence SAGHATGTTPQKLFVANYSQDVKQFANGFVVRIGAAANSTGTVIISPSTSATIRKIYPAFMLGSSVGNFS
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Known secondary structure (DSSP)

TT
S
SGGG



S
STT
S


SSSGGG





S


T
 .........150.........160.........170.........180.........190.........200.........210
Sequence DGKMGRFFNHTLVLLPDGCGTLLRAFYCILEPRSGNHCPAGNSYTSFATYHTPATDCSDGNYNRNASLNS
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Known secondary structure (DSSP) TS
S

S
SSTT

STTSTTSTT





TTTSSBTTB

TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence FKEYFNLRNCTFMYTYNITEDEILEWFGITQTAQGVHLFSSRYVDLYGGNMFQFATLPVYDTIKYYSIIP
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Known secondary structure (DSSP) TT




S
TTSTTT
TTT

B



S



 .........290.........300.........310.........320.........330.........340.........350
Sequence HSIRSIQSDRKAWAAFYVYKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFE
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Known secondary structure (DSSP)


GGG





TTS
TTS
TTSSS

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence AKPSGSVVEQAEDTKIASQLGNCVEYSLYGVSGRGVFQNCTAVGVRQQRFVYDAYQNLVGYYSDDGNYYC
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Known secondary structure (DSSP)







S
S


SS
TT




S
TTS

TT


TTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence LRACVSVPVSVIYDKETKTHATLFGSVACEHISSTMSQYSRSTRSMLKRRDSTYGPLQTPVGCVLGLVNS
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Known secondary structure (DSSP)




TTTT
GGG
GGG

SS
SS
SSS

TTS


SS
S



 .........500.........510...
Sequence SLFVEDCKLPLGQSLCALPDTPS
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Known secondary structure (DSSP)



S

S
TT


SS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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