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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5w66M_

Fold library idPDB HeaderMoleculeTitle
c5w66M_3.90PDB header: transcriptionChain: M: PDB Molecule: dna-directed rna polymerase i subunit rpa49;


Added to library: Sat Jul 29 09:21:42 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SEIEIESVQDQPSVAVGSFFKGFRAPSDTTFDLYKKKKSEKDEFVLHGENERLEYEGYTDSSSQASNQYV
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Known secondary structure (DSSP)






SS




TT



TT


TT

SS

TT


 .........80.........90.........100.........110.........120.........130.........140
Sequence VGLFNPEKKSIQLYKAPVLVSKVVSKSSKNLRGPKIKSKSDTRPSALRNALGEAFGTKKAKKAIADLERN
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Known secondary structure (DSSP) TTTT

SGGG



SS



TT
T
 .........150.........160.........170.........180.........190.........200.........210
Sequence RIDSDKLTDSAIDIVDSVRTASKDLPTRAQLDEITSNDRPTPLANIDATDVEQIYPIESIIPKKELQFIR
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Known secondary structure (DSSP) TSS
S




TSS
SS





TT
SSGGGTS
S
TT

 .........220.........230.........240.........250.........260.........270.........280
Sequence VSSILKEADKEKKLELFPYQNNSKYVAKKLDSLTQPSQMTKLQLLYYLSLLLGVYENRRVNNKTKLLERL
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Known secondary structure (DSSP)



SSB

S
S

SGGGTTT

BTTB
 .........290.........300.........310.........320.........330.........340.........350
Sequence NSPPEILVDGILSRFTVIKPGQFGRSKDRSYFIDPQNEDKILCYILAIIMHLDNFIVEITPLAHELNLKP
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Known secondary structure (DSSP) SS

S




B

TTTT

 .........360.........370.........380.........390......
Sequence SKVVSLFRVLGAIVKGATVAQAEAFGIPKSTAASYKIATMKVPFKL
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Known secondary structure (DSSP) TT


T

GGGTTTS

SS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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