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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5w65P_

Fold library idPDB HeaderMoleculeTitle
c5w65P_4.30PDB header: transcriptionChain: P: PDB Molecule: rna polymerase i-specific transcription initiation factor


Added to library: Sat Aug 5 08:28:18 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MSTFIRGPICGTDNCPSRLWRIIDGRRTCQYGHVMEGDVEFNDDEDDLNGLGAGVITRRLNLTTNATGSF
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Known secondary structure (DSSP)


S
SS


SSSS


TTTTSSS
SBS
S






S












SSS







 .........80.........90.........100.........110.........120.........130.........140
Sequence QSSQLTNSQLLQQQQRQSHKKFKKLIGHEAKLLFLKSFQFILKRQIRWLITEMRFPKEFEHVAKIIWLKI
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Known secondary structure (DSSP)





SS
TTT
S



S

 .........150.........160.........170.........180.........190.........200.........210
Sequence LKTINDQPQEELKLQLHMTSTISILYLASTHLSLPVYTCDYIKWICTAKMPYFQASEILPKSWRIQLPNY
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Known secondary structure (DSSP) S
TT





T


ST
SSTT

S
SS
SSTT
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence YVSILEGSISPFNGQLYNKIALTCGMIHFKEFFNSEISCQGLLLKLVMQCALPPEFYFYTKQVIEFEETD
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Known secondary structure (DSSP) TGGG
S

S


SSTTSSS
S

SS

TTTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence IRNLTLWERTDERHTGRVSNHAELRVLSYFMLTINWMLSFDRDRQYPLKWILSLTESLTQRTTTSESIGR
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Known secondary structure (DSSP) TS








STT






T

TT

S
S



SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence NIVKVVYPDKPTSSDYFQWSEEETLEFLKWMEKQFLPTQTSMEMTIDQKIARRKLYKIFPLDREDSTHQL
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Known secondary structure (DSSP) TT

SSSS
TTSSTT



SSS

TT




S
 .........430.........440.........450.........460.........470.........480.
Sequence TFIEDLQERYAKQTPFFPPARKEAIGRLLTHIASQLLVDFAISKEQLKDCISRIKNACLHR
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Known secondary structure (DSSP)
T
TT

TT
TTT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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