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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5w65O_

Fold library idPDB HeaderMoleculeTitle
c5w65O_4.30PDB header: transcriptionChain: O: PDB Molecule: rna polymerase i-specific transcription initiation factor


Added to library: Sat Aug 5 08:25:12 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFWDPTVANRLDSQYIQ
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SSS




SSS












SS

S









S




S


S
B




B

 .........80.........90.........100.........110.........120.........130.........140
Sequence TASDLRNYRDGTEIIAYASGKTGSVLNIAVLTRQNTLHLNRHNNVTSIELHSPIKSIKIPGASESIGRRS
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TTS
SS

S




SSS



SSSSTT
S






SS






TTSS


 .........150.........160.........170.........180.........190.........200.........210
Sequence NLVGIITENSFQIFRIESVHSRSCDVMVSSSEPLYFVEIDDLQVVDFAFNPWDLQQFAIIDIKGNWSIGR
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SS

B





STT





B





GGGSS






SS

S




TT

B


 .........220.........230.........240.........250.........260.........270.........280
Sequence IPKNFNNNNKRKLQLIDNLHGTIFDPEELSSWKRIEWFSHFQKILVFDRSKMIEIDFMNNWQTEVVQAKA
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SS
SSS















SSS
S



TTSS
TTTTTT
TT
SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence WSNIRDYKRIDDKNGILLTSREIIIVGASESNDPVRRISWKHDLDPDDTTLRITVQKVKKPDHILLVAFV
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Known secondary structure (DSSP) S




SSSSB

SS

B

B
BTTBSS




B






SS



SS

 .........360.........370.........380.........390.........400.........410.........420
Sequence YSMRHKRIYMHVFSHRKANLFQSLGCSTVLEIPGGTPTGIETILTLENFELVVDFLVKLRNSSEVYYYAL
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SS
S
TTT






SSS










TTB


 .........430.........440.........450.........460.........470.........480.........490
Sequence SNTQNSIIVDHPEWASLFNNADEREKESIGALVSQIKLKERERISRVQNLIEHENSHDEDKYLQDLGYRL
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Known secondary structure (DSSP)

S




S

TTS

T
S
SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence SIATNELLESWQKTKDESILSGSLSHSKLKNLLENSDSFASIPEFSSLLDQFFQYYQDQDVTFIGFEKLL
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Known secondary structure (DSSP) S
TT
S

STTT


S
TTTTT
TT
SSTTTS





 .........570.........580.........590.........600.........610.........620.........630
Sequence HLFLHEDVPGLDIFYNKLLQCWVLVSPQAELLTKEIVKDIIWSLARLEKPSLFEPIQNEISRSLSGPYQD
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Known secondary structure (DSSP) T
SS

TTTSS
SS
TTT





SS
S
 .........640
Sequence IISSWDMDDI
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SS confidence









Known secondary structure (DSSP) S



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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