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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5w1hA_

Fold library idPDB HeaderMoleculeTitle
c5w1hA_1.99PDB header: rna binding protein/rnaChain: A: PDB Molecule: lbacas13a (c2c2);


Added to library: Sat Sep 16 08:31:31 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KLTVNAKTAVVSENRSQEGILYNDPSRYGKSRKNDEDRDRYIESRLKSSGKLYRIFNETDELQWFLSEIV
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Known secondary structure (DSSP)
TTTTSSS
SS

TTTSB

TTSTT

SB



 .........80.........90.........100.........110.........120.........130.........140
Sequence KKINRRNGLVLSDMLSVDDRAFEKAFEKYAELSYTNRRNKVSGSPAFETCGVDAATAERLKGIISETNFI
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Known secondary structure (DSSP) STTSS
TTTTT

S


GGGTT

TS
 .........150.........160.........170.........180.........190.........200.........210
Sequence NRIKNNIDNKVSEDIIDRIIAKYLKKSLCRERVKRGLKKLLMNAFDLPYSDPDIDVQRDFIDYVLEDFYH
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Known secondary structure (DSSP) TT





B
GGG
STT




TT

TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence VRAKSQVSRSIKNMNMPVQPEGDGKFAITVSKGGTESGNKRSAEKEAFKKFLSDYASLDERVRDDMLRRM
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Known secondary structure (DSSP) T


S
TTS






S

S
 .........290.........300.........310.........320.........330.........340.........350
Sequence RRLVVLYFYGSDDSKLSDVNEKFDVWEDHAARRVDNREFIKLPLENKTDKDAERIRKNTVKELYRNQNIG
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Known secondary structure (DSSP)
TT
GGGT
TT



T


BSS








 .........360.........370.........380.........390.........400.........410.........420
Sequence CYRQAVKAVEEDNNGRYFDDKMLNMFFIHRIEYGVEKIYANLKQVTEFKARTGYLSEKIWKDLINYISIK
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Known secondary structure (DSSP) S
TTSS
S
T
SS

SGGGB
 .........430.........440.........450.........460.........470.........480.........490
Sequence YIAMGKAVYNYAMDELNASDKKEIELGKISEEYLSGISSFDYELIKAEEMLQRETAVYVAFAARHLSSQT
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Known secondary structure (DSSP) S
GGGS



S
S


GGGTT


 .........500.........510.........520.........530.........540.........550.........560
Sequence VELDSENSDFLLLKPKGTMDKNDKNKLASNNILNFLKDKETLRDTILQYFGGHSLWTDFPFDKYLAGGKD
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Known secondary structure (DSSP) B


SSS

GGG
B
TT
B
SS
TTSB
TTBGGGGBS
GGGGGGT
GGGGTTS
S
TT

 .........570.........580.........590.........600.........610.........620.........630
Sequence DVDFLTDLKDVIYSMRNDSFHYATHNNGKWNKELISAMFEHETERMTVVMKDKFYSNNLPMFYKNDDLKK
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Known secondary structure (DSSP) TT

SSS



S
SS
TTTTGGGTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence LLIDLYKDNVERASQVPSFNKVFVRKNFPALVRDKDNLGIELDLDADKGENELKFYNALYYMFKEIYYNA
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Known secondary structure (DSSP) SS




TTS

S
TTT
TTTT






TTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence FLNDKNVRERFITKATKVADNNYIAENDFGQRIKNIVQVNPDYTLAQICQLIMTEYNCMQKKSAYKMLLL
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Known secondary structure (DSSP) TTT
TTGGG


TT




S




 .........780.........790.........800.........810.........820.........830.........840
Sequence VNLRKAFLEFIKENYAFVLKPYKHDLCDKADFVPDFAKYVKPYAGLISRVAGSSELQKWYIVSRFLSPAQ
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Known secondary structure (DSSP)
GGGGS







GGGSSTT
GGG

TTT
TS
 .........850.........860.........870.........880.........890.........900.........910
Sequence ANHMLGFLHSYKQYVWDIYRRASETGTEINHSIAEDKIAGVDITDVDAVIDLSVKLCGTISSEISDYFKD
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Known secondary structure (DSSP) TT



TTS
SSTTT


S
GGGTSSS
 .........920.........930.........940.........950.........960.........970.........980
Sequence DEVYAEYISSYLDFEYDGGNYKDSLNRFCNSDAVNDQKVALYYDGEHPKLNRNIILSKLYGERRFLEKIT
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Known secondary structure (DSSP) TTTB




SS
TSTT

SSTT


S
S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence DRVSRSDIVEYYKLKKETSQYQTKGIFDSEDEQKNIKKFQEMKNIVEFRDLMDYSEIADELQGQLINWIY
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Known secondary structure (DSSP)

B
TTTTGGGSS
SSTT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LRERDLMNFQLGYHYACLNNDSNKQATYVTLDYQGKKNRKINGAILYQICAMYINGLPLYYVDKDSSEWT
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Known secondary structure (DSSP) TSSS



STT
TTTSTT



TTT
S
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence VSDGKESTGAKIGEFYRYAKSFENTSDCYASGLEIFENISEHDNITELRNYIEHFRYYSSFDRSFLGIYS
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Known secondary structure (DSSP)

S
S
TT
SS
S
STTTTS
GGGTTT

S
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence EVFDRFFTYDLKYRKNVPTILYNILLQHFVNVRFEFVSGKKMIGIDKKIAKEKECARITIREKNGVYSEQ
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Known secondary structure (DSSP) TTTT
TTTT
S






SSS

 .........1270.........1280.........1290.........1300.
Sequence FTYKLKNGTVYVDARDKRYLQSIIRLLFYPEKVNMDEMIEV
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Known secondary structure (DSSP)
SS
SS
TTS




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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