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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5vkvA_

Fold library idPDB HeaderMoleculeTitle
c5vkvA_UNKPDB header: oxidoreductaseChain: A: PDB Molecule: cytochrome c-type biogenesis protein ccda;


Added to library: Sat Feb 3 08:24:23 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MSLSLTAAFLAGVLSFLSPCVLPLVPTYLFYLGGARGRPLFNALFFILGFGAVFFLLGLPFTLLGGLLFE
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Known secondary structure (DSSP)


T
TTT
TGGG


S
TTTTTTGGGS
 .........80.........90.........100.........110.........120.........130.........140
Sequence HRQTLARVGGVVLVLFGLYMLGLRPRWGVSLRYEGETSRPLGAFLLGATLALGWTPCIGPILGAILTLTA
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Known secondary structure (DSSP)

TTT

SSS


SS


SS



GGGT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VGGGVGFLLAYILGLAVPFFVVALFADRIKGWLRRAGRISHYVEVLAGVVLVLVGVLLFTGTFTALNTFF
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Known secondary structure (DSSP) TT


STT
SS
 .........220....
Sequence LRITPEWLQRYLPS
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Known secondary structure (DSSP) S
TT



Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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