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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5vf3H_

Fold library idPDB HeaderMoleculeTitle
c5vf3H_3.30PDB header: virusChain: H: PDB Molecule: major capsid protein;


Added to library: Sat Sep 16 08:26:55 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AEIGGDHGYNATNIAAGQTSGAVTQIGPAVMGMVRRAIPNLIAFDICGVQPMNSPTGQVFALRAVYGKDP
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Known secondary structure (DSSP)







S
T

SSS


S
















STTSB



SSSS



BBSS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence VAAGAKEAFHPMYGPDAMFSGQGAAKKFPALAASTQTTVGDIYTHFFQETGTVYLQASVQVTIDAGATDA
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Known secondary structure (DSSP) S
TT

BSS
SSS


SSSSSS


B

TT



TT

SSS
SS




TT

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence AKLDAEIKKQMEAGALVEIAEGMATSIAELQEGFNGSTDNPWNEMGFRIDKQVIEAKSRQLKAAYSIELT
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Known secondary structure (DSSP) TTS





S
SSSTT

S




B











 .........220.........230.........240.........250.........260.........270.........280
Sequence QDLRAVHGMDADAELSGILATEIMLEINREVVDWINYSAQVGKSGMTLTPGSKAGVFDFQDPIDIRGARW
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Known secondary structure (DSSP) T


SSSSS
GGGS
TTS
SSTT
TTTTTT

T
 .........290.........300.........310.........320.........330.........340.........350
Sequence AGESFKALLFQIDKEAVEIARQTGRGEGNFIIASRNVVNVLASVDTGISYAAQGLATGFSTDTTKSVFAG
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Known secondary structure (DSSP) TTTSSS
S



TS

SS
S



S

SS

STTT
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence VLGGKYRVYIDQYAKQDYFTVGYKGPNEMDAGIYYAPYVALTPLRGSDPKNFQPVMGFKTRYGIGINPFA
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Known secondary structure (DSSP) TTT
SS
SS





SSSSSSS


TTTT


TTS
 .........430.........440.........450......
Sequence ESAAQAPASRIQSGMPSILNSLGKNAYFRRVYVKGI
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Known secondary structure (DSSP) S
S
SS
SSS
S

STTTSS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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