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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5vchB_

Fold library idPDB HeaderMoleculeTitle
c5vchB_2.35PDB header: protein transportChain: B: PDB Molecule: kap123;


Added to library: Sat Nov 4 08:36:05 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LPALIHILQNSSNDGIKQLAGVEARKQVSKHWGSLDAATQTSVKQSLLNSAFNEGKDAVRHANARVIASI
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Known secondary structure (DSSP)

S
TTSS

SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GSEELDEKKWPELIPNLLQAACDSNPKIRETAIFIILSLLESFNANLALHIDDFLNLFAQTINDSASLET
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Known secondary structure (DSSP) TT

TTTT
SSTT
GGGGGGTT
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence RSLSAQALSYVSSLIEEEGEINPQYAAKFASLIPSVVQVLDATIREGDTTNTKLIFNCLNDFLLLDSQLT
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Known secondary structure (DSSP) SSS

TT
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence GNTIADLVKLALQIAVNSDVDEDIRVFAVQFVTSALVYRKSKINQAKLGPEITLAALKVASEEIDVEDEL
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Known secondary structure (DSSP) TT
TTS

TT
S


 .........290.........300.........310.........320.........330.........340.........350
Sequence TNEDEENTPALTALRLISNASGELSPSQVGVPIIEHLPTXLSSSNPFERRSILLAISVLVTGSPDYTLSQ
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Known secondary structure (DSSP)





SS
GGGT
S

T
 .........360.........370.........380.........390.........400.........410.........420
Sequence FDKIIPATVTGLKDSEAVVQLAALKCIVQLSTNLQDEVARYHEQYLPLVIDIIDSAKHVVIYKYATLALD
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Known secondary structure (DSSP) T
SSSTTT

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence GLLEFIAHNDIIKYLDPLXNKLFQXLETQQSPKLRAAIVSAIGSCAFAAGSGFVPYFKTSVQYLQQFIQN
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Known secondary structure (DSSP) TS



GGGGTTSSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence VSQIEGLSEDDIELKALTFENISTXGRAVKSAAFAEYAEPLVNAAYEAIKTDSARLRESGYAFIANXAKV
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Known secondary structure (DSSP) TT

TT

S
TTTSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence YGKDFAPFLQTIIPEIFKTLEQEEYTVNTGIAYEKEVAAAALSELAIASKEHFLEYVEPSLKVLAEQVNE
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Known secondary structure (DSSP) GGGGGGGS





GGGG
 .........640.........650.........660.........670.........680.........690.........700
Sequence SYGLKETALHSXWAIVKAVLLTANLKEGEYPKGVPSGSYVDASALAVIQTVREVSLNNVIEEVETSXVIS
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Known secondary structure (DSSP)
SS
TT

TT



S

SS
SS
TTTT


 .........710.........720.........730.........740.........750.........760.........770
Sequence VFQDLSEXLRLFGPIIIXDNGDSTHLDQLCREALSVLKGEHACQTIDASETEATLLDVALDIYVALSTNL
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Known secondary structure (DSSP)
GGGT
BTTB
T
STTT




 .........780.........790.........800.........810.........820.........830.........840
Sequence VGGFAQVFTTAKPVILQLCQSKSKNKRSFAVGALSEIALGXRDENPFIQELLEALIISLTNDKSLEVRCN
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Known secondary structure (DSSP) TTTTTT
S
GGG
TT
S
 .........850.........860.........870.........880.........890.........900.........910
Sequence ASYGVGLLIEYSSFDVSAIYSPVLKSLYEILSVADEKNLDDEATKEIVDRTFSNVCGCVARXILKHQNLV
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Known secondary structure (DSSP)

S




GGGS
 .........920.........930.........940.........950.........960.........970.........980
Sequence PLEHTIPALLSHLPFNTAFEEYDPIFKLFLKLFQEQNSTIINEAPKVIAIFATVFEKESERIELETNSTL
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Known secondary structure (DSSP)
TT
S
SS
GGGTT
TS
T
 .........990.........1000.........1010.........1020.......
Sequence GREENLEKRKQFQSEEIKQQVIELLKHLNQQFNGAVAQNPVLAQVIA
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Known secondary structure (DSSP) T

TTTTTT
S
S
T
GGGTTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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