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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5vbgA_

Fold library idPDB HeaderMoleculeTitle
c5vbgA_2.80PDB header: biosynthetic proteinChain: A: PDB Molecule: penicillin-binding protein activator lpoa;


Added to library: Sat Sep 16 08:45:40 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NFTQTLQKDANASSEFYINKLGQTQELEDQQTYKLLAARVLIRENKVEQSAALLRELGELNDAQKLDRAL
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Known secondary structure (DSSP)
GGGGGGS


S



TT
T

S

 .........80.........90.........100.........110.........120.........130.........140
Sequence IEARISAAKNANEVAQNQLRALDLNKLSPSQKSRYYETLAIVAENRKDXIEAVKARIEXDKNLTDVQRHQ
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Known secondary structure (DSSP) TT
TS
GGGS
TT
T

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence DNIDKTWALLRSANTGVINNASDEGNAALGGWLTLIKAYNDYIRQPVQLSQALQSWKNAYPNHAAATLFP
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Known secondary structure (DSSP) S
T


TT
TTSSTTSS

 .........220.........230.........240.........250.........260.........270.........280
Sequence KELLTLLNFQQTNVSQIGLLLPLSGDGQILGTTIQSGFNDAKGNSTIPVQVFDTSXNSVQDIIAQAKQAG
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Known secondary structure (DSSP) GGGT









SSTTTT



TTTS
TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence IKTLVGPLLKQNLDVILADPAQIQGXDVLALNATPNSRAIPQLCYYGLSPEDEAESAANKXWNDGVRNPL
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Known secondary structure (DSSP)




S
GGGGTT
S


TT



TT



TT

 .........360.........370.........380.........390.........400.........410.........420
Sequence VAXPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLPADVTYFVQENNSNTTALYAVASPTELAEXKGYLT
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Known secondary structure (DSSP) SSSS

SSTT

TT


TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence NIVPNLAIYASSRASASATNTNTDFIAQXNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQLXRLYAXGAD
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Known secondary structure (DSSP) TT
TT

GGG

TTTTT
STTTT

GGGS
TTSTTT
 .........500.........510.........520.........530.........540...
Sequence AWLLINQFNELRQVPGYRLSGLTGILSADTNCNVERDXTWYQYQDGAIVPVAN
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Known secondary structure (DSSP) TSTT

TT
TT
B
TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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