Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5uz5D_

Fold library idPDB HeaderMoleculeTitle
c5uz5D_3.56PDB header: nuclear protein/rnaChain: D: PDB Molecule: u1 small nuclear ribonucleoprotein component prp42;


Added to library: Sat Nov 18 08:37:14 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DKYTALIHDENFSTLTLNVSRYPKSLAYWEKLLNYIVKASAPICKSTEPQLLKLIRCTYSSMLNEFPYLE
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP)
TTSSSGGGSTTTT
S
STTS
TTT
S

 .........80.........90.........100.........110.........120.........130.........140
Sequence NYYIDFALLEYKLGNVSMSHKIFQRGLQAFNQRSLLLWTSYLKFCNNVISHQKQLFKKYETAEEYVGLHF
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP) TT
TTT



SS
T
 .........150.........160.........170.........180.........190.........200.........210
Sequence FSGEFWDLYLEQISSRCTSSKKYWNVLRKILEIPLHSFSKFYALWLQRIDDIMDLKQLSQLTSKDELLKK
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) TT
SSSSTTS

SS


SGGGGTTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LKIDINYSGRKGPYLQDAKKKLKKITKEMYMVVQYQVLEIYSIFESKIYINYYTSPETLVSSDEIETWIK
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) T


SS

S

TTTT



S


TT



 .........290.........300.........310.........320.........330.........340.........350
Sequence YLDYTITLQTDSLTHLNFQRALLPLAHYDLVWIKYSKWLINSKNDLLGAKNVLLMGLKFSLKKTEIIKLL
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP) T
TTS
SSSTS


S

 .........360.........370.........380.........390.........400.........410.........420
Sequence YSVICKLNEYVLLRNLLEKIESSYSDNVENVDDFEIFWDYLQFKTFCQNSLYSSRYSDSQSNGLLNKELF
Predicted secondary structure




SS confidence





































































Known secondary structure (DSSP) T
TS
STT
SSS


SSTT



S
S
 .........430.........440.........450.........460.........470.........480.........490
Sequence DKVWKRLSCKEKKSGQEILLNNLVQFYSKDTVEFVEKNIFQKIIEFGWEYYLQNGMFWNCYCRLIYFDTS
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP) TTTSS

TTSTT
STTTTT

T
SS
 .........500.........510.........520.........530.........
Sequence RSYLDKRQYIVRKIWPQIDKKFAQSVLPSLTEFCESYFPEEMDTLEEMF
Predicted secondary structure









SS confidence
















































Known secondary structure (DSSP) S
TGGGS
TTGGGTS
STTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D