Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5ux4B_

Fold library idPDB HeaderMoleculeTitle
c5ux4B_2.81PDB header: hydrolaseChain: B: PDB Molecule: cathepsin d;


Added to library: Sat Jun 16 08:25:17 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EPVSELLKNYLDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWVHHKYNSDKSSTYVKN
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP)

TTTTTTTTT


BTTS
TTSGGGGTS

B
GGG
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GTSFDIHYGSGSLSGYLSQDTVSVPCKGGIKVEKQIFGEATKQPGVVFIAAKFDGILGMGYPFISVNNVL
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP)
SS
S





SS
SSS
S
GGG
GGG

 .........150.........160.........170.........180.........190.........200.........210
Sequence PVFDNLMKQKLVEKNIFSFYLNRDPTGQPGGELMLGGTDSRYYHGELSYLNVTRKAYWQVHMDQLEVGSE
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP)
TT
SSSS


TTSS
STS

GGGB
S


STT
TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence LTLCKGGCEAIVDTGTSLLVGPVDEVKELQKAIGAVPLIQGEYMIPCEKVSSLPIITFKLGGQNYELHPE
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) STT

TT
SS
T

TTS

GGGGGGS

TT
 .........290.........300.........310.........320.........330.........340
Sequence KYILKVSQAGKTICLSGFMGMDIPPPSGPLWILGDVFIGCYYTVFDREYNRVGFAKAATL
Predicted secondary structure
























SS confidence



























































Known secondary structure (DSSP) SSSSS



TTT
S

TTTTTTB



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D