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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c5udjA_

Fold library idPDB HeaderMoleculeTitle
c5udjA_1.69PDB header: rna binding proteinChain: A: PDB Molecule: interferon-induced protein with tetratricopeptide repeats


Added to library: Mon Mar 6 13:42:54 2017
 
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 1........10.........20.........30.........40.........50.........60.........70
Sequence HQVKDSLEQLRCHFTWELSIDDDEMPDLENRVLDQIEFLDTKYSVGIHNLLAYVKHLKGQNEEALKSLKE
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Known secondary structure (DSSP)
TTS
SGGGS




GGG


S

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence AENLMQEEHDNQANVRSLVTWGNFAWMYYHMGRLAEAQTYLDKVENICKKLSNPFRYRMECPEIDCEEGW
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Known secondary structure (DSSP) TTTT


TTT
TT
SSSS



 .........150.........160.........170.........180.........190.........200.........210
Sequence ALLKCGGKNYERAKACFEKVLEVDPENPESSAGYAISAYRLDGFKLATKNHKPFSLLPLRQAVRLNPDNG
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Known secondary structure (DSSP) S
GGGTT
TT
TTTBTT


TT
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence YIKVLLALKLQDEGQEAEGEKYIEEALANMSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLL
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Known secondary structure (DSSP) TT
TS
TTT

TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence HHQIGLCYKAQMIQIKEATKGQPRGQNREKLDKMIRSAIFHFESAVEKKPTFEVAHLDLARMYIEAGNHR
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Known secondary structure (DSSP) TTT



TT
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence KAEENFQKLLCMKPVVEETMQDIHFHYGRFQEFQKKSDVNAIIHYLKAIKIEQASLTRDKSINSLKKLVL
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Known secondary structure (DSSP) T


SSTTTS

S
S
B
 .........430.........440.........450.........460
Sequence RKLRRKALDLESLSLLGFVYKLEGNMNEAEEYYERAERLA
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Known secondary structure (DSSP)
TT
T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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Michael Sternberg  
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