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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5ud6B_

Fold library idPDB HeaderMoleculeTitle
c5ud6B_2.40PDB header: lyaseChain: B: PDB Molecule: dihydrodipicolinate synthase;


Added to library: Sat Dec 30 09:46:15 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KHFFGRVITALVTPFKLTGVEVDYGVAESLAAHLAENGSDAIIVAGTTGESATLTWSEEYELFRVVKSAV
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Known secondary structure (DSSP)

TT
S



B
TTSSSB
TTT
SSSGGGTGGGS
T
 .........80.........90.........100.........110.........120.........130.........140
Sequence AGTKCRVIAGAGSNSTEEAIEATKKSAKLGLDGTLQVVPYYNKPPQQGIMAHFRAIANAAPDLPMMLYNI
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Known secondary structure (DSSP) TTSS



SST
S


SS


STTS


 .........150.........160.........170.........180.........190.........200.........210
Sequence PGRTGINMTAETSIKLAEMCPNIVALEASGNLEQFARIRRATSPDFALYSGDDALTLPLLSLGGNGVVSV
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Known secondary structure (DSSP) S




TT


S

S
TTSB
SSGGGTT

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence ASHFIGPEIQRMIEHFVDLGNPEEAFRIHCRYMDLFEALFVMANPIPAKAALRLLGWPVGPTRLPLTDIT
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Known secondary structure (DSSP) TTS

TTSSSTTTT






TTS



 .........290........
Sequence ASAEQQLRQAMIAAGLLK
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Known secondary structure (DSSP) TT



Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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