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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5u1dB_

Fold library idPDB HeaderMoleculeTitle
c5u1dB_3.97PDB header: transport proteinChain: B: PDB Molecule: antigen peptide transporter 2;


Added to library: Thu Feb 9 14:48:58 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DQVNNKVLMWRLLKLSRPDLPLLVAAFFFLVLAVLGETLIPHYSGRVIDILGGDFDPHAFASAIFFMCLF
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Known secondary structure (DSSP)
TGGGT


 .........80.........90.........100.........110.........120.........130.........140
Sequence SFGSSLSAGCRGGCFTYTMSRINLRIREQLFSSLLRQDLGFFQETKTGELNSRLSSDTTLMSNWLPLNAN
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Known secondary structure (DSSP) S
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence VLLRSLVKVVGLYGFMLSISPRLTLLSLLHMPFTIAAEKVYNTRHQEVLREIQDAVARAGQVVREAVGGL
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Known secondary structure (DSSP)
STTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence QTVRSFGAEEHEVCRYKEALEQCRQLYWRRDLERALYLLVRRVLHLGVQMLMLSCGLQQMQDGELTQGSL
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Known secondary structure (DSSP) T
TT


 .........290.........300.........310.........320.........330.........340.........350
Sequence LSFMIYQESVGSYVQTLVYIYGDMLSNVGAAEKVFSYMDRQPNLPSPGTLAPTTLQGVVKFQDVSFAYPN
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Known secondary structure (DSSP) TTTT



S




B

SS



B



SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence RPDRPVLKGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQVLLDEKPISQYEHCYLHSQVVSV
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Known secondary structure (DSSP)
TT

S



B
SS


TTS
TSS

S
BBSSSBTTTB


 .........430.........440.........450.........460.........470.........480.........490
Sequence GQEPVLFSGSVRNNIAYGLQSCEDDKVMAAAQAAHADDFIQEMEHGIYTDVGEKGSQLAAGQKQRLAIAR
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Known secondary structure (DSSP)
SS



SSBTTT
SS

T
STTGGG
B

TTTSSS
 .........500.........510.........520.........530.........540.........550..
Sequence ALVRDPRVLILDEATSALDVQCEQALQDWNSRGDRTVLVIAHRLQTVQRAHQILVLQEGKLQ
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Known secondary structure (DSSP)

S

S
TTTS
TSGGGGGG


SS

SB
SSSB


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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