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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5u1cA_

Fold library idPDB HeaderMoleculeTitle
c5u1cA_3.90PDB header: viral proteinChain: A: PDB Molecule: hiv-1 integrase, sso7d chimera;


Added to library: Thu Feb 9 16:57:15 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEG
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Known secondary structure (DSSP)




TT


STT













TTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence KVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACWWAGIKQEFG
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Known secondary structure (DSSP) TTT

SS

TTS






TGGGSTT


 .........150.........160.........170.........180.........190.........200.........210
Sequence IPYNPQSQGVIQSMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIFRVYYR
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Known secondary structure (DSSP)
TT
GGGGGGG
SST

BTTTTB



 .........220.........230.........240.........250.
Sequence DSRDPVWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIR
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Known secondary structure (DSSP)
TT

S





SSSSS
GGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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