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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5tw1F_

Fold library idPDB HeaderMoleculeTitle
c5tw1F_2.76PDB header: transcription activator/transferase/dnaChain: F: PDB Molecule: rna polymerase sigma factor siga;


Added to library: Thu Feb 9 18:33:20 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNH
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Known secondary structure (DSSP)

TS








 .........80.........90.........100.........110.........120.........130.........140
Sequence LLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQAR
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Known secondary structure (DSSP) GGGTTSSS


STT


SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence TIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDDSQLG
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Known secondary structure (DSSP) SS


TS


TTS
T




TT
B




BGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence DFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQI
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Known secondary structure (DSSP) GG


TTS

TS
TTTTS



T

 .........290.........300..
Sequence ESKTMSKLRHPSRSQVLRDYLD
Predicted secondary structure

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Known secondary structure (DSSP) SGGGGGG


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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