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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5thaA_

Fold library idPDB HeaderMoleculeTitle
c5thaA_1.80PDB header: rna binding proteinChain: A: PDB Molecule: gem-associated protein 5;


Added to library: Thu Feb 9 17:24:52 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QEPRTLPPSPNWYCARCSDAVPGGLFGFAARTSVFLVRVGPGAGESPGTPPFRVIGELVGHTERVSGFTF
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Known secondary structure (DSSP)



B


SS
TT
TBTTTSGGG


TTS
S


SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence SHHPGQYNLCATSSDDGTVKIWDVETKTVVTEHALHQHTISTLHWSPRVKDLIVSGDEKGVVFCYWFNRN
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Known secondary structure (DSSP)

STT
TTTTS
TTTT



S

SSSTTTTSGGGT
 .........150.........160.........170.........180.........190.........200.........210
Sequence DSQHLFIEPRTIFCLTCSPHHEDLVAIGYKDGIVVIIDISKKGEVIHRLRGHDDEIHSIAWCPLPGEGCY
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Known secondary structure (DSSP)

SS

SS
TTTTS
GGGTT



S

SSS

-
 .........220.........230.........240.........250.........260.........270.........280
Sequence LATGSKDQTIRIWSCSRGRGVMILKLPFLKRRGGGIDPTVKERLWLTLHWPSNQPTQLVSSCFGGELLQW
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Known secondary structure (DSSP) TTSTTTT






SS


TT
-







TT
TT
GGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence DLTQSRRKYTLFSASSEGQNHSRIVFNLCPLQTEDDKQLLLSTSMDRDVKCWDIATLECSWTLPSLGGFA
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Known secondary structure (DSSP) TT




TTSSSSS
S
SS
BTT

TTSTTTT
BSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence YSLAFSSVDIGSLAIGVGDGMIRVWNTLSIKNNYDVKNFWQGVKSKVTALCWHPTKEGCLAFGTDDGKVG
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Known secondary structure (DSSP)
SSSTTTTS
TT
SS
TT

TTT
S

SSSTTTTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence LYDTYSNKPPQISSTYHKKTVYTLAWGPPVPPMSLSLALYSCGGEGIVLQHNPWKLSGEAFDINKLIRDT
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Known secondary structure (DSSP) TTSSS


SS

SS



TT

-

TTS

TT
TTS

T
 .........500.........510.........520.........530.........540.........550.........560
Sequence NSIKYKLPVHTEISWKADGKIMALGNEDGSIEIFQIPNLKLICTIQQHHKLVNTISWHHEHGSQPELSYL
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Known secondary structure (DSSP) T

S




TTSSTTS
TTTT



S


S
SSSGGGGG
 .........570.........580.........590.........600.........610.........620.........630
Sequence MASGSNNAVIYVHNLKTVIESSPESPVTITEPYRTLSGHTAKITSVAWSPHHDGRLVSASYDGTAQVWDA
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Known secondary structure (DSSP) SSS

T

SS

S
S


SS

TTSSSTTS
T
 .........640.........650.........660.........670.........680....
Sequence LREEPLCNFRGHQGRLLCVAWSPLDPDCIYSGADDFCVHKWLTSMQDHSRPPQG
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Known secondary structure (DSSP) TTT


SS

SS
TTTTS
GGG

BSS




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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