PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5th6D_

Fold library id	PDB Header	Molecule	Title
c5th6D_	1.70	PDB header: hydrolase/hydrolase inhibitor	Chain: D: PDB Molecule: matrix metalloproteinase-9,matrix metalloproteinase-9;

Links to external resources
Added to library: Mon Mar 6 12:03:28 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T D R Q L A E E Y L Y R Y G Y T R V A L G P A L L L L Q K Q L S L P E T G E L D S A T L K A M R T P R C G V P D L G R F Q T F E G D L K W H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T
S S
T S
B
S S
S S S
S S
S S S S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence H H N I T Y W I Q N Y S E D L P R A V I D D A F A R A F A L W S A V T P L T F T R V Y S R D A D I V I Q F G V A E H G D G Y P F D G K D G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T S
T S S
S S T T S S
S S
S S S
S S S S B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L A H A F P P G P G I Q G D A H F D D D E L W S L G Y S L F L V A A H E F G H A L G L D H S S V P E A L M Y P M Y R F T E G P P L H K D D V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S T T T T
T T S
T T
S
T T S T T S S B
S S
S

. . . . . . .

Sequence N G I R H L Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	D	R	Q	L	A	E	E	Y	L	Y	R	Y	G	Y	T	R	V	A	L	G	P	A	L	L	L	L	Q	K	Q	L	S	L	P	E	T	G	E	L	D	S	A	T	L	K	A	M	R	T	P	R	C	G	V	P	D	L	G	R	F	Q	T	F	E	G	D	L	K	W	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T																		T					S	S										T	S		B		S	S		S	S	S		S	S			S	S	S	S	S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	H	H	N	I	T	Y	W	I	Q	N	Y	S	E	D	L	P	R	A	V	I	D	D	A	F	A	R	A	F	A	L	W	S	A	V	T	P	L	T	F	T	R	V	Y	S	R	D	A	D	I	V	I	Q	F	G	V	A	E	H	G	D	G	Y	P	F	D	G	K	D	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S											T	T	S																			T	S	S							S	S	T	T	S	S								S	S		S	S	S					S	S	S	S	B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	A	H	A	F	P	P	G	P	G	I	Q	G	D	A	H	F	D	D	D	E	L	W	S	L	G	Y	S	L	F	L	V	A	A	H	E	F	G	H	A	L	G	L	D	H	S	S	V	P	E	A	L	M	Y	P	M	Y	R	F	T	E	G	P	P	L	H	K	D	D	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S	S	T	T	T	T						T	T	S																				T	T					S		T	T	S	T	T	S	S	B					S	S		S
	.	.	.	.	.	.	.
Sequence	N	G	I	R	H	L	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)