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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5t3bB_

Fold library idPDB HeaderMoleculeTitle
c5t3bB_1.40PDB header: hydrolaseChain: B: PDB Molecule: glycoside hydrolase;


Added to library: Thu Feb 9 11:31:22 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PVPGPAETYPNSTKQYQPIIVEYAEKPDKAFIEAKTRILPYLVGYEQQTKTQDEYLQSVNKYGSYAKGQK
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Known secondary structure (DSSP)






TTSS


SSTTS



GGGBTT





SB
TTS
B
SS

 .........80.........90.........100.........110.........120.........130.........140
Sequence FKATGRFRVEKNSNGRSWIVDPEGYPYYVRGIASFRMDGNSSAFGKLYSSVDDWVAKSQKQFSEIGFHSV
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Known secondary structure (DSSP)



SS


TTS


TTS

S

SS
S

SSTT

 .........150.........160.........170.........180.........190.........200.........210
Sequence CAFGKEEGDKAVNDYNKSASSPLTQAPSFSFLAEFKNSKGISYPGQNVNLKIGLVFYDGWDEWCKEYLNS
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Known secondary structure (DSSP) S


SS


B

T


GGG
GGGGGGGGGSTTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence DAFGMFRNNPDVLGFFSDNEIDFSTWGNRLLDRFLKISNKQDPAYIAAAKFMTDKDKSANVSDVTDELNN
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Known secondary structure (DSSP) GGGTTTTT
TTB

BBS
SS

S
BTTB
T
S
TTSTT

SSGGG

 .........290.........300.........310.........320.........330.........340.........350
Sequence EFAGICAEKYYSAIKNAVKASKDPELLYLGSRLHSLPKYNSYIIKAAGKYCDVISINYYSKWSPEKGYMD
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Known secondary structure (DSSP) SS
TTS
B



B
TTGGG

SS

S
SS

 .........360.........370.........380.........390.........400.........410.........420
Sequence GWKNQAGGTPFMVTEFYTKGEDTKLDNSSGAGFVVRDQQNRGFAYQHFTLGLLEAKNCVGWVFFKYLDDE
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Known secondary structure (DSSP) TTT



GGG




SSSSSST
TTS
SB
BT
 .........430.........440.........450.......
Sequence DCNKGMLDYNYKPYTSLTKYMSDINWNVYNLIDYFDK
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Known secondary structure (DSSP) TB


SB
TTS
B
TT


Download:PDB structure FASTA sequence

Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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