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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5t1qB_

Fold library idPDB HeaderMoleculeTitle
c5t1qB_2.15PDB header: hydrolaseChain: B: PDB Molecule: n-acetylmuramoyl-l-alanine amidase domain-containing


Added to library: Sat Jun 10 08:22:55 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TKNPQLPTQDELKHKSKPAQSFNNDVNQKDTRATSLFETDPSISNNQFNVVDSKDTRQFVKSIAKDAHRI
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Known secondary structure (DSSP)


TTS

T
B


SS

SSS
GGGB





SS







 .........80.........90.........100.........110.........120.........130.........140
Sequence GQDNDIYASVXIAQAILESDSGRSALAKSPNHNLFGIKGAFEGNSVPFNTLEADGNQLYSINAGFRKYPS
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Known secondary structure (DSSP) TTB
TTTTSTTTSTTT

SS

BS
BTTBTT

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence TKESLKDYSDLIKNGIDGNRTIYKPTWKSEADSYKDATSHLSKTYATDPNYAKKLNSIIKHYQLTQFDDE
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Known secondary structure (DSSP)
BTTBTTTTGGGBTTT
SST


TTTTGGGGSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence RXPDLDKYERSIKDYDDSSDEFKPFREVSDSXPYPHGQCTWYVYNRXKQFGTSISGDLGDAHNWNNRAQY
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Known secondary structure (DSSP) S


GGG





TT
SS






SS
SS
TTSTT



TT

SGGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence RDYQVSHTPKRHAAVVFEAGQFGADQHYGHVAFVEKVNSDGSIVISESNVKGLGIISHRTINAAAAEELS
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Known secondary structure (DSSP) TT
SS

TT

TTGGG

TTT

TTS
SSSSTT
TTS
 .....
Sequence YITGK
Predicted secondary structure


SS confidence




Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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